Related Experiment Video
Updated: Oct 18, 2025

09:04
Sequence-specific and Selective Recognition of Double-stranded RNAs over Single-stranded RNAs by Chemically Modified Peptide Nucleic Acids
Published on: September 21, 2017
9.7K
Zn2+-Dependent peptide nucleic acid-based artificial ribonucleases with unprecedented efficiency and specificity
Olivia Luige1, Partha Pratim Bose1, Rouven Stulz1,2,3
1Department of Biosciences and Nutrition, Karolinska Institutet, Neo, 141 83 Huddinge, Sweden. Roger.Stromberg@ki.se.
Summary
We developed novel artificial enzymes called PNAzymes that efficiently cleave specific RNA sequences. These zinc-dependent PNAzymes show rapid RNA cleavage, offering potential for therapeutic applications.
Area of Science:
- Biochemistry
- Molecular Biology
- Synthetic Chemistry
Background:
- Artificial enzymes offer programmable specificity for molecular targets.
- RNA cleavage is a key mechanism in gene regulation and therapeutic intervention.
Purpose of the Study:
- To develop novel, efficient RNA-cleaving artificial enzymes.
- To investigate the catalytic activity of zinc-dependent PNA conjugates.
Main Methods:
- Synthesis of Zn2+-dependent dimethyl-dipyridophenazine PNA conjugates.
- Assay development for monitoring RNA cleavage kinetics.
- Testing PNAzyme activity on clinically relevant RNA models.
Main Results:
- The developed PNAzymes exhibit efficient and site-specific RNA cleavage.
- Achieved RNA cleavage with a half-life of 10 minutes.
- Demonstrated cleavage of clinically relevant RNA models.
Conclusions:
- Zn2+-dependent PNA conjugates function as effective RNA cleaving artificial enzymes.
- These PNAzymes show promise for targeted RNA manipulation and potential therapeutic applications.
More Related Videos
Related Concept Videos
Ribozymes
12.8K
The term ribozyme is used for RNA that can act as an enzyme. Ribozymes are mainly found in selected viruses, bacteria, plant organelles, and lower eukaryotes. Ribozymes were first discovered in 1982 when Tom Cech’s laboratory observed Group I introns acting as enzymes. This was shortly followed by the discovery of another ribozyme, Ribonulcease P, by Sid Altman’s laboratory. Both Cech and Altman received the Nobel Prize in chemistry in 1989 for their work on ribozymes.
Ribozymes can...
Ribozymes can...
12.8K
Types of RNA
69.6K
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
69.6K
Ribosome Profiling
3.7K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.7K
Riboswitches
8.8K
Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
8.8K
RNA Interference
26.7K
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
26.7K
Nucleic Acid Structure
7.6K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
DNA Structure
DNA...
7.6K

