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Updated: Oct 18, 2025

Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
Вариабельность последовательности D-петли митохондриальной ДНК у лошадей забайкальской породы
L A Khrabrova1, N V Blohina1, B Z Bazaron2
1All-Russian Research Institute for Horse Breeding, Divovo, Ryazan Region, Russia.
The Zabaikalskaya horse, an indigenous Siberian breed, exhibits high genetic diversity in its maternal lineage. Mitochondrial DNA analysis revealed 31 haplotypes across 8 haplogroups, indicating significant genetic richness in this hardy horse population.
Area of Science:
- Animal Genetics
- Zoology
- Molecular Biology
Background:
- The Zabaikalskaya horse is an indigenous Siberian breed known for endurance and adaptability.
- This breed thrives in the challenging Baikal steppe environment under year-round herd maintenance.
Purpose of the Study:
- To investigate the genetic characteristics of the Zabaikalskaya horse breed's maternal lineage.
- To analyze mitochondrial DNA (mtDNA) polymorphisms for breed characterization.
Main Methods:
- Hair samples were collected from 31 Zabaikalskaya horses.
- The mtDNA D-loop region (530 bp) was sequenced and analyzed.
- Phylogenetic analysis used the maximum composite likelihood (MCL) model with bootstrap analysis.
Main Results:
- Thirty-one distinct haplotypes belonging to 8 haplogroups (B, C, G, H, L, M, Q, R) were identified.
- Seventeen polymorphic sites were found in the sequenced D-loop fragment, primarily A→G, G→A, and T→C transitions.
- Haplogroups Q (25.81%), B (19.35%), G (16.13%), and H (12.90%) were the most prevalent.
Conclusions:
- The Zabaikalskaya horse breed displays a high level of genetic diversity in its mitochondrial DNA.
- This genetic diversity is comparable to other Eurasian horse populations, reflecting its unique evolutionary history.
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