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Updated: Oct 18, 2025

Novel 3D/VR Interactive Environment for MD Simulations, Visualization and Analysis
Published on: December 18, 2014
Making it Rain: Cloud-Based Molecular Simulations for Everyone
Pablo R Arantes1, Marcelo D Polêto2, Conrado Pedebos3
1Department of Bioengineering, University of California, Riverside, California 92521, United States.
Abstract:
We present a user-friendly front-end for running molecular dynamics (MD) simulations using the OpenMM toolkit on the Google Colab framework. Our goals are (1) to highlight the usage of a cloud-computing scheme for educational purposes for a hands-on approach when learning MD simulations and (2) to exemplify how low-income research groups can perform MD simulations in the microsecond time scale. We hope this work facilitates teaching and learning of molecular simulation throughout the community.
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