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Related Experiment Video

Updated: Oct 18, 2025

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes

Published on: May 22, 2018

Panache: a web browser-based viewer for linearized pangenomes.

Éloi Durant^1,2,3,4, François Sabot^1,4, Matthieu Conte²

¹DIADE, Univ Montpellier, CIRAD, IRD, Montpellier 34830, France.

Bioinformatics (Oxford, England)

|October 3, 2021

Summary

This summary is machine-generated.

Panache visualizes eukaryotic pangenomes using a user-friendly linear layout. This tool aids in exploring gene and sequence presence/absence variations for better pangenomic analysis.

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Area of Science:

Bioinformatics
Computational Biology
Genomics

Background:

Pangenomics has evolved from studying bacterial populations to encompassing all available sequences.
Developing efficient visualization tools for eukaryotic pangenomes remains a challenge.
While graph representations are emerging, linear visualizations offer user-friendliness.

Purpose of the Study:

To introduce Panache, a novel tool for visualizing and exploring linear representations of pangenomes.
To address the gap in user-friendly visualization tools for eukaryotic pangenomics.

Main Methods:

Panache utilizes a linear layout, similar to genome browsers.
It displays gene-based and sequence-based pangenome data.
Presence/absence variations and additional tracks are presented along a linear axis.

Main Results:

Panache provides an effective method for visualizing pangenomic data.
The tool facilitates exploration of presence/absence variations in a linear format.
It offers a pangenomic perspective within a familiar genome browser-like interface.

Conclusions:

Panache enhances the exploration and understanding of eukaryotic pangenomes.
The tool's linear representation offers a user-friendly approach to complex pangenomic data.
Panache is readily available for the research community.