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Updated: Oct 18, 2025

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes
Published on: May 22, 2018
Panache: a web browser-based viewer for linearized pangenomes
Éloi Durant1,2,3,4, François Sabot1,4, Matthieu Conte2
1DIADE, Univ Montpellier, CIRAD, IRD, Montpellier 34830, France.
Motivation:
Pangenomics evolved since its first applications on bacteria, extending from the study of genes for a given population to the study of all of its sequences available. While multiple methods are being developed to construct pangenomes in eukaryotic species there is still a gap for efficient and user-friendly visualization tools. Emerging graph representations come with their own challenges, and linearity remains a suitable option for user-friendliness.
Results:
We introduce Panache, a tool for the visualization and exploration of linear representations of gene-based and sequence-based pangenomes. It uses a layout similar to genome browsers to display presence absence variations and additional tracks along a linear axis with a pangenomics perspective.
Availability And Implementation:
Panache is available at github.com/SouthGreenPlatform/panache under the MIT License.
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