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Published on: February 15, 2022
A comprehensive review of image analysis methods for microorganism counting: from classical image processing to deep
Jiawei Zhang1, Chen Li1, Md Mamunur Rahaman1
1Microscopic Image and Medical Image Analysis Group, College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, 110169 China.
Image analysis offers an efficient alternative to traditional manual methods for counting microorganisms like bacteria and fungi. This review explores image processing techniques for accurate and scalable microorganism quantification.
Area of Science:
- Microbiology
- Biotechnology
- Image Analysis
Background:
- Microorganisms are vital in biotechnology, medicine, and industry.
- Accurate microorganism counting is essential for analyzing biomass and biological activity.
- Traditional manual counting methods are laborious, subjective, and not scalable.
Purpose of the Study:
- To review the development of microorganism counting methods using digital image analysis.
- To summarize and analyze commonly used image processing and segmentation techniques.
- To provide insights into future trends and integrated systems for microorganism counting.
Main Methods:
- Literature review of over 144 papers on microorganism counting.
- Categorization of microorganisms into bacteria and others.
- Summary and analysis of image segmentation and processing methodologies.
Main Results:
- Image analysis significantly improves efficiency over traditional manual counting.
- Various image segmentation techniques are applied for microorganism analysis.
- Common technological points in image processing methods are identified.
Conclusions:
- Digital image analysis presents a more efficient and scalable approach to microorganism counting.
- The review offers guidance for developing integrated microorganism counting systems.
- This work provides a foundation for future research in automated microbial analysis.
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