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Published on: September 28, 2018
PDZ Binding Kinase/T-LAK Cell-Derived Protein Kinase Plays an Oncogenic Role and Promotes Immune Escape in Human
Tingting Feng1,2,3, Yan Zhang4, Sunbin Ling5
1Department of Pathology, The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institute of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Hangzhou, Zhejiang 310022, China.
Background:
PDZ binding kinase (PBK)/T-LAK cell-derived protein kinase (TOPK) is an important mitotic kinase that promotes tumor progression in some cancers. However, the pan-cancer analysis of PBK/TOPK and its role in tumor immunity are limited.
Methods:
The oncogenic and immune roles of PBK in various cancers were explored using multiple databases, including Oncomine, Human Protein Atlas, ULCAN, Tumor Immune Estimation Resource 2.0, STRING, and Gene Expression Profiling Interactive Analysis 2, and data collected from The Cancer Genome Atlas and Genotype-Tissue Expression Project. Several bioinformatics tools and methods were used for quantitative analyses and panoramic descriptions, such as the DESeq2 and Tumor Immune Dysfunction and Exclusion (TIDE) algorithm.
Results:
PBK was expressed at higher levels in most solid tumors than in normal tissues in multiple databases. PBK was associated with an advanced tumor stage and grade and a poor prognosis in most cases. PBK was associated with tumor immune cell infiltration in most cases and was especially positively correlated with TAMs, Tregs, MDSCs, and T cell exhaustion in KIRC, LGG, and LIHC. PBK was closely related to TMB, MSI, and immune checkpoint genes in various cancers, and patients with higher expression of PBK in KIRC, LGG, and LIHC had higher TIDE scores and lower immune responses in the predicted results. PBK was closely related to cell cycle regulation and immune-related processes in LIHC and LGG according to GO and KEGG enrichment analyses.
Conclusions:
PBK may play an oncogenic role in most solid tumors and promotes immune escape, especially in KIRC, LGG, and LIHC. This study suggests the potential value of PBK inhibitors combined with immunotherapy.
Insights
PDZ binding kinase (PBK), also known as TOPK, drives tumor progression and immune evasion in cancers like KIRC, LGG, and LIHC. Targeting PBK with inhibitors may enhance immunotherapy effectiveness.
Area of Science:
- Oncology
- Cancer Immunology
- Bioinformatics
Background:
- PDZ binding kinase (PBK)/T-LAK cell-derived protein kinase (TOPK) is a key mitotic kinase implicated in tumor progression.
- Limited pan-cancer analyses exist for PBK/TOPK, particularly concerning its role in tumor immunity.
Purpose of the Study:
- To comprehensively analyze the oncogenic and immune roles of PBK across various cancer types.
- To investigate the association of PBK expression with tumor progression, prognosis, and the tumor immune microenvironment.
Main Methods:
- Utilized multiple public databases (Oncomine, Human Protein Atlas, TCGA, etc.) for expression and clinical data analysis.
- Employed bioinformatics tools like DESeq2 and the TIDE algorithm for quantitative and immune-related analyses.
- Performed Gene Ontology (GO) and KEGG pathway enrichment analyses to identify PBK-associated biological processes.
Main Results:
- PBK is upregulated in most solid tumors and linked to advanced stage, poor prognosis, and increased tumor-infiltrating immune cells (TAMs, Tregs, MDSCs).
- PBK expression correlates with Tumor Mutational Burden (TMB), Microsatellite Instability (MSI), and immune checkpoint genes.
- Elevated PBK in KIRC, LGG, and LIHC is associated with higher TIDE scores, indicating immune escape and reduced anti-tumor immunity.
Conclusions:
- PBK exhibits oncogenic functions and promotes immune escape in various solid tumors, notably KIRC, LGG, and LIHC.
- PBK is identified as a potential therapeutic target, suggesting that PBK inhibitors could be beneficial when combined with cancer immunotherapy.
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