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Updated: Oct 17, 2025

Magnetic Resonance Imaging of Multiple Sclerosis at 7.0 Tesla
Published on: February 19, 2021
FLAIR2 post-processing: improving MS lesion detection in standard MS imaging protocols
Tobias Zrzavy1, Alice Wielandner2, Lukas Haider2,3
1Department of Neurology, Medical University of Vienna, Waehringer Guertel 18-20, 1090, Vienna, Austria.
Background:
Technical improvements in magnetic resonance imaging (MRI) acquisition, such as higher field strength and optimized sequences, lead to better multiple sclerosis (MS) lesion detection and characterization. Multiplication of 3D-FLAIR with 3D-T2 sequences (FLAIR2) results in isovoxel images with increased contrast-to-noise ratio, increased white-gray-matter contrast, and improved MS lesion visualization without increasing MRI acquisition time. The current study aims to assess the potential of 3D-FLAIR2 in detecting cortical/leucocortical (LC), juxtacortical (JC), and white matter (WM) lesions.
Objective:
To compare lesion detection of 3D-FLAIR2 with state-of-the-art 3D-T2-FLAIR and 3D-T2-weighted images.
Methods:
We retrospectively analyzed MRI scans of thirteen MS patients, showing previously noted high cortical lesion load. Scans were acquired using a 3 T MRI scanner. WM, JC, and LC lesions were manually labeled and manually counted after randomization of 3D-T2, 3D-FLAIR, and 3D-FLAIR2 scans using the ITK-SNAP tool.
Results:
LC lesion visibility was significantly improved by 3D-FLAIR2 in comparison to 3D-FLAIR (4 vs 1; p = 0.018) and 3D-T2 (4 vs 1; p = 0.007). Comparing LC lesion detection in 3D-FLAIR2 vs. 3D-FLAIR, 3D-FLAIR2 detected on average 3.2 more cortical lesions (95% CI - 9.1 to 2.8). Comparing against 3D-T2, 3D-FLAIR2 detected on average 3.7 more LC lesions (95% CI 3.3-10.7).
Conclusions:
3D-FLAIR2 is an easily applicable time-sparing MR post-processing method to improve cortical lesion detection. Larger sampled studies are warranted to validate the sensitivity and specificity of 3D-FLAIR2.
Insights
The novel 3D-FLAIR² technique significantly enhances the detection of multiple sclerosis (MS) cortical lesions compared to standard MRI sequences. This time-efficient method improves visualization of MS lesions, aiding in diagnosis and characterization.
Area of Science:
- Radiology
- Neuroimaging
- Medical Physics
Background:
- Advancements in MRI, including higher field strength and optimized sequences, improve multiple sclerosis (MS) lesion detection.
- Multiplying 3D-FLAIR with 3D-T2 sequences (FLAIR²) creates isovoxel images with enhanced contrast-to-noise ratio and white-gray matter contrast.
- FLAIR² improves MS lesion visualization without extending MRI acquisition time.
Purpose of the Study:
- To evaluate the efficacy of 3D-FLAIR² in detecting cortical/leucocortical (LC), juxtacortical (JC), and white matter (WM) lesions in MS patients.
- To compare the lesion detection capabilities of 3D-FLAIR² against state-of-the-art 3D-T2-FLAIR and 3D-T2-weighted MRI sequences.
Main Methods:
- Retrospective analysis of MRI scans from thirteen MS patients with high cortical lesion load.
- Scans were acquired using a 3 Tesla (3T) MRI scanner.
- Manual labeling and counting of WM, JC, and LC lesions were performed on randomized 3D-T2, 3D-FLAIR, and 3D-FLAIR² scans using ITK-SNAP software.
Main Results:
- 3D-FLAIR² demonstrated significantly improved LC lesion visibility compared to 3D-FLAIR (p=0.018) and 3D-T2 (p=0.007).
- On average, 3D-FLAIR² detected 3.2 more cortical lesions than 3D-FLAIR (95% CI -9.1 to 2.8).
- Compared to 3D-T2, 3D-FLAIR² detected an average of 3.7 more LC lesions (95% CI 3.3-10.7).
Conclusions:
- 3D-FLAIR² is a practical, time-saving post-processing method for enhancing cortical lesion detection in MS.
- Further research with larger patient cohorts is recommended to validate the sensitivity and specificity of 3D-FLAIR² for MS lesion detection.
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