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Updated: Oct 17, 2025

A Lipid Extraction and Analysis Method for Characterizing Soil Microbes in Experiments with Many Samples
Published on: July 16, 2017
Actualistic approaches to interpreting the role of biological decomposition in microbial preservation
Ashley Manning-Berg1, Tara Selly2,3, Julie K Bartley4
1Department of Biology, Geology & Environmental Science, University of Tennessee Chattanooga, Chattanooga, Tennessee, USA.
Abstract:
Taphonomic processes, especially post-mortem biological decomposition, act as crucial controls on the microbial fossil record. Information loss during the fossilization process obscures interpretation of ancient microbial ecology and limits our view of preserved ecosystems. Conversely, taphonomic information can itself provide insight into fossilization pathways and processes. This information-gain approach requires specific attention to taphonomic patterns in ancient assemblages and robust modern analogue data to serve as points of reference. In this study, we combine experimental taphonomy with decomposition models in order to constrain taphonomic hypotheses regarding Proterozoic microfossil assemblages. Several filamentous and coccoidal prokaryotic and eukaryotic phototrophs were evaluated for taphonomic pattern over the course of a short (~100 days) decomposition experiment. In parallel, simple numerical models were constructed to explain potential taphonomic pathways. These analogue data were then compared to two Mesoproterozoic fossil assemblages, the ~1.5 Ga Kotuikan Formation, Siberia, and the ~1 Ga Angmaat Formation, Canada. Concordant with previous experiments and observations, our results suggest that sheath morphology is more persistent than cell/trichome morphology during early stages of decomposition. These experiments also suggest that taphonomic change in cell morphology may follow one of several trajectories, resulting in distinct taphonomic endpoints. Model output suggests two categories of underlying mechanism and resultant taphonomic trajectory: (1) uniform decomposition, resulting in a low overall taphonomic grade and poor preservation, and (2) faster decomposition of structurally compromised individuals, producing a final population with better overall preservation of very few individuals. In this experiment, cells of coccoidal organisms exhibit the first pattern and trichomes of filamentous organisms and some sheaths exhibit the second. Comparison with preserved microfossil assemblages suggests that differences in taphonomic pattern between parts of an assemblage could be useful in assessing taphonomic processes or degree of taphonomic loss in an entire assemblage.
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