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Updated: Oct 16, 2025

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Class I histone deacetylases (HDAC) critically contribute to Ewing sarcoma pathogenesis.
Oxana Schmidt1, Nadja Nehls1, Carolin Prexler1
1Children's Cancer Research Center and Department of Pediatrics, Klinikum rechts der Isar, Technische Universität München, München, Germany.
Targeting class I histone deacetylases (HDACs) in Ewing sarcoma (EwS) inhibits tumor growth and invasiveness. Combination therapy with HDAC inhibitors presents a promising new treatment strategy for this rare bone cancer.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Histone acetylation and deacetylation are implicated in Ewing sarcoma (EwS) pathogenesis.
- Class I histone deacetylases (HDACs) were investigated for their role in EwS.
Purpose of the Study:
- To investigate the role of class I HDACs in EwS pathogenesis.
- To evaluate the therapeutic potential of class I HDAC inhibitors in EwS.
Main Methods:
- Utilized various class I HDAC inhibitors (TSA, Romidepsin, Entinostat, PCI-34051).
- Employed CRISPR/Cas9 knockouts and RNA interference for class I HDACs.
- Analyzed effects using microarray, qRT-PCR, western blotting, Co-IP, proliferation, apoptosis, differentiation, invasion assays, and xenograft models.
Main Results:
- Class I HDACs are constitutively expressed in EwS, with high expression correlating with decreased survival.
- Knockout of HDAC1 and HDAC2 inhibited invasiveness and tumor growth in vivo.
- HDAC inhibitors blocked EWS-FLI1 specific gene expression and suppressed metastasis-associated genes.
- HDAC inhibitors enhanced sensitivity to chemotherapy and promoted endothelial/neuronal differentiation.
- HDAC inhibitors synergized with EED inhibitors, inhibiting tumor growth in xenografts and forming complexes with PRC2.
Conclusions:
- Class I HDACs are key mediators of the EWS-ETS transcriptional program in EwS.
- Combination therapy involving HDAC inhibitors offers a novel treatment strategy for EwS.
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