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Updated: Oct 16, 2025

Guidelines and Experience Using Imaging Biomarker Explorer IBEX for Radiomics
Published on: January 8, 2018
Radiomics integration into a picture archiving and communication system
Ivan Zhovannik1,2, Suraj Pai2, Talia A da Silva Santos1,3
1Department of Radiation Oncology, Radboud Institute for Health Sciences, Radboud University Medical Center, The Netherlands.
This study introduces SQLite4Radiomics, an integrated solution for radiomics extraction and Picture Archiving and Communication System (PACS) application. It efficiently extracts quantitative imaging biomarkers for tumor characterization and clinical outcome prediction.
Area of Science:
- Medical Imaging
- Radiology
- Computational Pathology
Background:
- Radiomics involves extracting quantitative imaging biomarkers for clinical outcome prognosis and tumor characterization.
- Integrating radiomics extraction with open-source Picture Archiving and Communication Systems (PACS) is crucial for clinical application.
- Existing workflows can be cumbersome, hindering the widespread adoption of radiomics.
Purpose of the Study:
- To develop and evaluate an integrated software solution (SQLite4Radiomics) for seamless radiomics extraction.
- To bridge the gap between radiomics analysis and clinical implementation by combining it with an open-source PACS.
- To assess the performance and efficiency of the integrated system across different imaging modalities and datasets.
Main Methods:
- Development of SQLite4Radiomics, an open-source software integrating radiomics extraction with PACS.
- Testing the software across three distinct imaging modalities.
- Benchmarking performance using lung cancer open datasets (RIDER and MMD) to measure extraction time per Region of Interest (ROI).
Main Results:
- The integrated SQLite4Radiomics software demonstrated effective radiomics extraction capabilities.
- Performance was validated across multiple imaging modalities.
- Median extraction time per ROI was found to be 10.7 seconds (percentiles 25-75: 8.9-18.7) in lung cancer datasets.
Conclusions:
- The developed SQLite4Radiomics offers an efficient and integrated solution for radiomics analysis.
- This integration facilitates the clinical application of radiomics by streamlining biomarker extraction within a PACS environment.
- The software shows promising performance for tumor characterization and outcome prediction using quantitative imaging biomarkers.
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