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Drug Repurposing Hypothesis Generation Using the "RE:fine Drugs" System
Published on: December 11, 2016
Computational repurposing of therapeutic small molecules from cancer to pulmonary hypertension
Vinny Negi1, Jimin Yang1, Gil Speyer2
1Center for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, Blood, and Vascular Medicine Institute, Division of Cardiology, Department of Medicine, University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center, Pittsburgh, PA, USA.
Abstract:
Cancer therapies are being considered for treating rare noncancerous diseases like pulmonary hypertension (PH), but effective computational screening is lacking. Via transcriptomic differential dependency analyses leveraging parallels between cancer and PH, we mapped a landscape of cancer drug functions dependent upon rewiring of PH gene clusters. Bromodomain and extra-terminal motif (BET) protein inhibitors were predicted to rely upon several gene clusters inclusive of galectin-8 (LGALS8). Correspondingly, LGALS8 was found to mediate the BET inhibitor–dependent control of endothelial apoptosis, an essential role for PH in vivo. Separately, a piperlongumine analog’s actions were predicted to depend upon the iron-sulfur biogenesis gene ISCU. Correspondingly, the analog was found to inhibit ISCU glutathionylation, rescuing oxidative metabolism, decreasing endothelial apoptosis, and improving PH. Thus, we identified crucial drug-gene axes central to endothelial dysfunction and therapeutic priorities for PH. These results establish a wide-ranging, network dependency platform to redefine cancer drugs for use in noncancerous conditions.
Insights
Researchers repurposed cancer drugs for pulmonary hypertension (PH) by analyzing gene networks. They identified bromodomain and extra-terminal motif (BET) inhibitors and a piperlongumine analog that target key pathways, offering new therapeutic strategies for PH.
Area of Science:
- Genomics
- Pharmacology
- Translational Medicine
Background:
- Pulmonary hypertension (PH) is a rare disease lacking effective computational screening for drug discovery.
- Cancer therapies show potential for treating noncancerous diseases like PH, but require robust screening methods.
Purpose of the Study:
- To develop a computational screening platform for repurposing cancer drugs for PH.
- To identify specific drug-gene interactions crucial for treating PH.
Main Methods:
- Transcriptomic differential dependency analyses were used to map cancer drug functions in PH gene clusters.
- Key drug-gene axes, including BET inhibitors targeting galectin-8 (LGALS8) and a piperlongumine analog targeting ISCU, were identified and validated.
Main Results:
- LGALS8 was identified as mediating BET inhibitor-dependent control of endothelial apoptosis in PH.
- A piperlongumine analog was found to inhibit ISCU glutathionylation, improving oxidative metabolism and reducing endothelial apoptosis in PH.
- The study identified crucial drug-gene axes central to endothelial dysfunction and therapeutic priorities for PH.
Conclusions:
- A network dependency platform was established to redefine cancer drugs for noncancerous conditions like PH.
- The findings highlight specific therapeutic targets and drug candidates for PH treatment.
- This approach offers a broad strategy for repurposing existing drugs for rare diseases.
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