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Updated: Oct 16, 2025

In Vitro Selection of Engineered Transcriptional Repressors for Targeted Epigenetic Silencing
Published on: May 5, 2023
KDM5B promotes immune evasion by recruiting SETDB1 to silence retroelements
Shang-Min Zhang1, Wesley L Cai1,2, Xiaoni Liu1,3
1Department of Pathology, Yale School of Medicine, New Haven, CT, USA.
Abstract:
Tumours use various strategies to evade immune surveillance1,2. Immunotherapies targeting tumour immune evasion such as immune checkpoint blockade have shown considerable efficacy on multiple cancers3,4 but are ineffective for most patients due to primary or acquired resistance5-7. Recent studies showed that some epigenetic regulators suppress anti-tumour immunity2,8-12, suggesting that epigenetic therapies could boost anti-tumour immune responses and overcome resistance to current immunotherapies. Here we show that, in mouse melanoma models, depletion of KDM5B-an H3K4 demethylase that is critical for melanoma maintenance and drug resistance13-15-induces robust adaptive immune responses and enhances responses to immune checkpoint blockade. Mechanistically, KDM5B recruits the H3K9 methyltransferase SETDB1 to repress endogenous retroelements such as MMVL30 in a demethylase-independent manner. Derepression of these retroelements activates cytosolic RNA-sensing and DNA-sensing pathways and the subsequent type-I interferon response, leading to tumour rejection and induction of immune memory. Our results demonstrate that KDM5B suppresses anti-tumour immunity by epigenetic silencing of retroelements. We therefore reveal roles of KDM5B in heterochromatin regulation and immune evasion in melanoma, opening new paths for the development of KDM5B-targeting and SETDB1-targeting therapies to enhance tumour immunogenicity and overcome immunotherapy resistance.
Insights
Depleting KDM5B, an epigenetic regulator, boosts anti-tumour immunity and enhances immunotherapy responses in melanoma. This occurs by reactivating silenced retroelements, triggering immune responses and tumour rejection.
Area of Science:
- Immunology
- Epigenetics
- Oncology
Background:
- Tumours evade immune surveillance using multiple strategies.
- Immunotherapies like immune checkpoint blockade show efficacy but face resistance.
- Epigenetic regulators can suppress anti-tumour immunity, suggesting therapeutic potential.
Purpose of the Study:
- To investigate the role of KDM5B, an H3K4 demethylase, in melanoma immune evasion.
- To explore KDM5B's potential in overcoming resistance to current immunotherapies.
Main Methods:
- Utilized mouse melanoma models to study KDM5B depletion.
- Investigated the mechanism of KDM5B-mediated immune suppression, including SETDB1 recruitment and retroelement regulation.
- Assessed adaptive immune responses and responses to immune checkpoint blockade.
Main Results:
- KDM5B depletion induced robust adaptive immune responses and enhanced responses to immune checkpoint blockade in mouse melanoma.
- KDM5B recruits SETDB1 to epigenetically silence endogenous retroelements (e.g., MMVL30) in a demethylase-independent manner.
- Derepression of retroelements activated cytosolic RNA/DNA sensing pathways, leading to type-I interferon response, tumour rejection, and immune memory.
Conclusions:
- KDM5B suppresses anti-tumour immunity in melanoma through epigenetic silencing of retroelements.
- KDM5B plays a role in heterochromatin regulation and immune evasion.
- Targeting KDM5B or SETDB1 offers a potential strategy to enhance tumour immunogenicity and overcome immunotherapy resistance.
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