Joint Analysis of Genetic Correlation, Mendelian Randomization and Colocalization Highlights the Bi-Directional Causal Association Between Hypothyroidism and Primary Biliary Cirrhosis
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Updated: Oct 16, 2025

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Published on: March 17, 2023
Yanjun Wang1, Ping Guo1, Yanan Zhang1
1Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan, China.
Insights
This study found a two-way causal link between hypothyroidism and primary biliary cirrhosis (PBC). Genetic analysis revealed shared architecture, suggesting these conditions influence each other, impacting prevention strategies.
Area of Science:
- Genetics
- Epidemiology
- Gastroenterology
Background:
- Hypothyroidism and primary biliary cirrhosis (PBC) frequently co-occur in observational studies.
- The causal relationship between hypothyroidism and PBC remains uncertain.
- Understanding this link is crucial for disease etiology and management.
Purpose of the Study:
- To investigate the potential causal association between hypothyroidism and PBC.
- To determine if the relationship is bidirectional.
- To leverage genetic data for causal inference.
Main Methods:
- Utilized genetic correlation analysis to assess shared genetic architecture.
- Employed Mendelian randomization (MR) with inverse variance weighted (IVW) and other methods.
- Conducted colocalization analysis to identify shared causal variants.
- Performed sensitivity analyses to ensure robustness of findings.
Main Results:
- Significant genetic correlation (0.117, p=0.006) found between hypothyroidism and PBC.
- MR analysis indicated hypothyroidism increases PBC risk (OR 1.223, p=2.76e-3).
- PBC was also found to causally increase hypothyroidism risk (OR 1.049, p=0.012).
- Colocalization analysis confirmed shared causal variants, supporting bidirectional association.
Conclusions:
- Evidence supports a bidirectional causal relationship between hypothyroidism and PBC.
- Findings offer insights into the etiology of both conditions.
- Results may inform targeted prevention and intervention strategies for hypothyroidism and PBC.
Abstract:
Background: Hypothyroidism and primary biliary cirrhosis (PBC) are often co-existed in observational epidemiological studies. However, the causal relationship between them remains unclear. Methods: Genetic correlation, Mendelian randomization (MR) and colocalization analysis were combined to assess the potential causal association between hypothyroidism and PBC by using summary statistics from large-scale genome-wide association studies. Various sensitivity analyses had been conducted to assess the robustness and the consistency of the findings. Results: The linkage disequilibrium score regression demonstrated significant evidence of shared genetic architecture between hypothyroidism and PBC, with the genetic correlation estimated to be 0.117 (p = 0.006). The OR of hypothyroidism on PBC was 1.223 (95% CI, 1.072-1.396; p = 2.76 × 10-3) in MR analysis with inverse variance weighted (IVW) method. More importantly, the results from other 7MR methods with different model assumptions, were almost identical with that of IVW, suggesting the findings were robust and convincing. On the other hand, PBC was also causally associated with hypothyroidism (OR, 1.049; 95% CI, 1.010-1.089; p = 0.012), and, again, similar results can also be obtained from other MR methods. Various sensitivity analyses regarding the outlier detection and leave-one-out analysis were also performed. Besides, colocalization analysis suggested that there existed shared causal variants between hypothyroidism and PBC, further highlighting the robustness of the results. Conclusion: Our results suggest evidence for the bi-directional causal association between hypothyroidism and PBC, which may provide insights into the etiology of hypothyroidism and PBC as well as inform prevention and intervention strategies directed toward both diseases.
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