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Updated: Oct 16, 2025

In Silico Identification and Characterization of circRNAs During Host-Pathogen Interactions
Published on: October 21, 2022
Circular RNA Circ-0003006 Promotes Hepatocellular Carcinoma Proliferation and Metastasis Through Sponging miR-542-3p
Qiang Tu1,2, Xiaoxiang You1,2, Jun He1,2
1Department of Hepatobiliary Oncology Surgery, Jiangxi Cancer Hospital of Nanchang University, Nanchang, People's Republic of China.
Insights
Circular RNA circ-0003006 promotes hepatocellular carcinoma (HCC) progression by sponging miR-542-3p, leading to increased HIF-1A levels. Silencing circ-0003006 inhibits HCC cell growth both in vitro and in vivo.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Hepatocellular carcinoma (HCC) is a prevalent gastrointestinal cancer with unclear underlying mechanisms.
- Circular RNAs (circRNAs) are increasingly recognized for their roles in various biological functions and disease progression.
Purpose of the Study:
- To investigate the role and mechanism of circ-0003006 in hepatocellular carcinoma progression.
Main Methods:
- Bioinformatic analysis identified differentially expressed circRNAs in HCC tissues.
- Real-time quantitative PCR (RT-qPCR) and fluorescence in situ hybridization (FISH) were used for verification and localization.
- Cell proliferation, migration, and invasion assays, along with in vivo tumor formation experiments, were conducted.
- Mechanism was elucidated using RNA pull-down, dual-luciferase reporter assays, and gene silencing/overexpression studies.
Main Results:
- Circ-0003006 was found to be upregulated in HCC tissues.
- Knockdown of circ-0003006 significantly inhibited HCC cell proliferation and metastasis in vitro and tumor growth in vivo.
- Circ-0003006 acts as a molecular sponge for miR-542-3p, thereby upregulating its target gene, HIF-1A.
- Overexpression of HIF-1A reversed the inhibitory effects of circ-0003006 knockdown.
Conclusions:
- Circ-0003006 promotes HCC progression both in vitro and in vivo.
- The mechanism involves circ-0003006 sponging miR-542-3p to release the inhibition on HIF-1A.
Introduction:
Hepatocellular carcinoma (HCC) is one most common cancer types among gastrointestinal cancer over the world, while its underlying mechanisms remain unclear. CircRNA has been revealed to participate in multiple biological functions and contribute to various diseases' progression.
Methods:
Bioinformatic analysis of the differently expressed circRNAs in the HCC tissues, then verified by real-time quantitative PCR (RT-qPCR) assay. We found that circ-0003006 was upregulated in the HCC tissues, the cell fractionation assay and RNA fluorescence in situ hybridization (FISH) were performed to confirm the cell location of circ-0003006. shRNA silence assay was used to knock down the expression of circ-0003006 in the HCC cells.
Results:
Cell account kit 8 (CCK-8) and transwell assay were revealed that circ-0003006 knockdown inhibited the proliferation and metastasis in HCC cells. The target miR‑542‑3p and target gene HIF-1A were predicted by bioinformatics analysis, then verified through biotinylated RNA pull-down and dual-luciferase reporter assays. The mechanism, circ-0003006, probably acted as a sponge of miR‑542‑3p and regulated HIF-1A levels in hepatocellular carcinoma cells. Moreover, HIF-1A overexpression abolished the effect of circ-0003006 inhibition on the progression of hepatocellular carcinoma cells. The subcutaneous tumor formation experiment indicated that circ-0003006 knockdown inhibited the HCC cell growth in vivo.
Conclusion:
Circ-0003006 was demonstrated to promote HCC progression in vitro and in vivo by sponging miR‑542‑3p to release the inhibition on HIF-1A.
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