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Updated: Oct 16, 2025

Single-Molecule Fluorescence Visualization of DNA Polymerase Dynamics at G-Quadruplexes
Published on: April 4, 2025
The Interactions of H2TMPyP, Analogues and Its Metal Complexes with DNA G-Quadruplexes-An Overview
Catarina I V Ramos1, Ana R Monteiro1,2, Nuno M M Moura1
1LAQV-REQUIMTE, Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal.
Abstract:
The evidence that telomerase is overexpressed in almost 90% of human cancers justifies the proposal of this enzyme as a potential target for anticancer drug design. The inhibition of telomerase by quadruplex stabilizing ligands is being considered a useful approach in anticancer drug design proposals. Several aromatic ligands, including porphyrins, were exploited for telomerase inhibition by adduct formation with G-Quadruplex (GQ). 5,10,15,20-Tetrakis(N-methyl-4-pyridinium)porphyrin (H2TMPyP) is one of the most studied porphyrins in this field, and although reported as presenting high affinity to GQ, its poor selectivity for GQ over duplex structures is recognized. To increase the desired selectivity, porphyrin modifications either at the peripheral positions or at the inner core through the coordination with different metals have been handled. Herein, studies involving the interactions of TMPyP and analogs with different DNA sequences able to form GQ and duplex structures using different experimental conditions and approaches are reviewed. Some considerations concerning the structural diversity and recognition modes of G-quadruplexes will be presented first to facilitate the comprehension of the studies reviewed. Additionally, considering the diversity of experimental conditions reported, we decided to complement this review with a screening where the behavior of H2TMPyP and of some of the reviewed metal complexes were evaluated under the same experimental conditions and using the same DNA sequences. In this comparison under unified conditions, we also evaluated, for the first time, the behavior of the AgII complex of H2TMPyP. In general, all derivatives showed good affinity for GQ DNA structures with binding constants in the range of 106-107 M-1 and ligand-GQ stoichiometric ratios of 3:1 and 4:1. A promising pattern of selectivity was also identified for the new AgII derivative.
Insights
Telomerase inhibition is a promising anticancer strategy. This study reviews porphyrin ligands, like H₂TMPyP, for G-quadruplex (GQ) DNA binding, finding new silver complexes show improved selectivity for cancer drug design.
Area of Science:
- Biochemistry
- Medicinal Chemistry
- Molecular Biology
Background:
- Telomerase overexpression in cancers presents a therapeutic target.
- G-quadruplex (GQ) DNA structures are key targets for anticancer drugs.
- Porphyrin ligands, such as H₂TMPyP, bind to GQ but often lack selectivity.
Purpose of the Study:
- To review interactions of TMPyP analogs with GQ and duplex DNA.
- To evaluate H₂TMPyP and its metal complexes under unified conditions.
- To assess the selectivity of a novel AgII-H₂TMPyP complex for GQ DNA.
Main Methods:
- Literature review of porphyrin-DNA interactions.
- Experimental screening of H₂TMPyP and metal complexes with GQ and duplex DNA.
- Spectroscopic and binding studies to determine affinity and stoichiometry.
Main Results:
- All tested porphyrin derivatives exhibited strong affinity for GQ DNA (106-107 M-1).
- Ligand-GQ stoichiometry was generally 3:1 or 4:1.
- The novel AgII-H₂TMPyP complex demonstrated a promising selectivity profile for GQ DNA.
Conclusions:
- Modified porphyrins and their metal complexes are effective GQ binders.
- The AgII-H₂TMPyP complex shows potential for selective anticancer drug development.
- Further investigation into selective GQ binders is warranted for targeted cancer therapy.
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