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Frequent Epigenetic Inactivation of DIRAS-1 and DIRAS-2 Contributes to Chemo-Resistance in Gliomas
Tanja Rothhammer-Hampl1, Franziska Liesenberg2, Natalie Hansen2
1Department of Neuropathology, Regensburg University Hospital, 93053 Regensburg, Germany.
Abstract:
We previously reported that DIRAS-3 is frequently inactivated in oligodendrogliomas due to promoter hypermethylation and loss of the chromosomal arm 1p. DIRAS-3 inactivation was associated with better overall survival. Consequently, we now investigated regulation and function of its family members DIRAS-1 and DIRAS-2. We found that DIRAS-1 was strongly downregulated in 65% and DIRAS-2 in 100% of analyzed glioma samples compared to non-neoplastic brain tissue (NNB). Moreover, a significant down-regulation of DIRAS-1 and -2 was detected in glioma data obtained from the TCGA database. Mutational analyses did not reveal any inactivating mutations in the DIRAS-1 and -2 coding regions. Analysis of the DIRAS-1 and -2 promoter methylation status showed significantly higher methylation in IDH-mutant astrocytic and IDH-mutant and 1p/19q-codeleted oligodendroglial tumors compared to NNB. Treatment of U251MG and Hs683 glioblastoma cells lines with 5-azacytidine led to significant re-expression of DIRAS-1 and -2. For IDH-wild-type primary gliomas, however, we did not observe significantly elevated DIRAS-1 and -2 promoter methylation levels, but still detected strong downregulation of both DIRAS family members. Additional analyses revealed that DIRAS-1 and -2 expression was also regulated by histone modifications. We observed a shift towards promoter heterochromatinization for DIRAS-1 and less promoter euchromatinization for DIRAS-2 in IDH-wild-type glioblastomas compared to controls. Treatment of the two glioblastoma cell lines with a histone deacetylase inhibitor led to significant re-expression of DIRAS-1 and -2. Functionally, overexpression of DIRAS-1 and -2 in glioblastoma cells translated into significantly higher sensitivity to lomustine treatment. Analyses of DNA damage markers revealed that DIRAS-1 and -2 may play a role in p53-dependent response to alkylating chemotherapy.
Insights
DIRAS-1 and DIRAS-2 are frequently downregulated in gliomas due to epigenetic changes like promoter hypermethylation and histone modifications. Restoring their expression increases sensitivity to chemotherapy, suggesting a role in DNA damage response.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- DIRAS-3 inactivation is linked to better survival in oligodendrogliomas.
- The regulation and function of DIRAS family members DIRAS-1 and DIRAS-2 in gliomas remain largely unexplored.
Purpose of the Study:
- To investigate the epigenetic regulation and functional role of DIRAS-1 and DIRAS-2 in glioma pathogenesis.
- To determine if DIRAS-1 and DIRAS-2 expression influences response to chemotherapy.
Main Methods:
- Analysis of DIRAS-1 and DIRAS-2 expression and promoter methylation in glioma samples and cell lines.
- Treatment of glioblastoma cell lines with epigenetic modifiers (5-azacytidine, histone deacetylase inhibitor).
- Assessment of glioblastoma cell sensitivity to lomustine and analysis of DNA damage markers.
Main Results:
- DIRAS-1 and DIRAS-2 were significantly downregulated in glioma samples compared to non-neoplastic brain tissue, with DIRAS-2 showing 100% downregulation.
- Promoter hypermethylation of DIRAS-1 and DIRAS-2 was observed in IDH-mutant gliomas, and re-expression was induced by 5-azacytidine.
- Histone modifications also regulate DIRAS-1 and DIRAS-2 expression, with re-expression observed after treatment with a histone deacetylase inhibitor.
- Overexpression of DIRAS-1 and DIRAS-2 enhanced glioblastoma cell sensitivity to lomustine and may be involved in p53-dependent DNA damage response.
Conclusions:
- DIRAS-1 and DIRAS-2 are epigenetically silenced in gliomas through promoter hypermethylation and altered histone modifications.
- Restoring DIRAS-1 and DIRAS-2 expression sensitizes glioblastoma cells to alkylating chemotherapy, highlighting their potential as therapeutic targets.
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