Mechanistic Insight into Metal Ion-Catalyzed Transamination
Robert J Mayer1, Harpreet Kaur1, Sophia A Rauscher1
1University of Strasbourg, CNRS, ISIS UMR 7006, 67000 Strasbourg, France.
Journal of the American Chemical Society
|November 3, 2021
Summary
Metal ions can catalyze transamination reactions, a key biological process, under conditions relevant to life. This suggests a simpler evolutionary origin for metabolic pathways, predating complex enzymes and co-factors.
Area of Science:
- Biochemistry
- Chemical Biology
- Evolutionary Biology
Background:
- Enzyme and co-factor mediated reactions can occur without them, catalyzed by metal ions.
- Metabolic pathways may have evolved from inorganic catalysts to complex organocatalysts.
- Transamination mechanisms are well-studied with enzymes/co-factors but less so with metal ions at biological temperatures.
Purpose of the Study:
- Investigate which metal ions catalyze transamination under biologically relevant conditions (pH 7, 20-50 °C).
- Elucidate the detailed mechanism of metal ion-catalyzed transamination.
- Explore the evolutionary implications of metal ion catalysis in biological reactions.
Main Methods:
- Screening of various metal ions for transamination catalysis.
- Kinetic studies to determine reaction rates and orders.
- Stereochemical analysis to understand reaction pathways.
- Computational studies to model reaction mechanisms.
Main Results:
- Cu2+, Ni2+, Co2+, and V5+ identified as active catalysts under biological conditions.
- Cu2+ and Co2+ stabilize a key imine intermediate.
- V5+ accelerates the reaction by increasing imine acidity.
- Ni2+ exhibits both stabilizing and acidity-increasing effects to a lesser extent.
Conclusions:
- Metal ions efficiently catalyze transamination under biologically compatible conditions.
- Amino group transfer is feasible without enzymes or co-factors via direct metal ion catalysis.
- Findings support the hypothesis of early metabolic pathways utilizing inorganic catalysts.
Related Concept Videos
Introduction to Mechanisms of Enzyme Catalysis
9.2K
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes...
9.2K
Reduction of Alkynes to trans-Alkenes: Sodium in Liquid Ammonia
9.7K
Alkynes can be reduced to trans-alkenes using sodium or lithium in liquid ammonia. The reaction, known as dissolving metal reduction, proceeds with an anti addition of hydrogen across the carbon–carbon triple bond to form the trans product. Since ammonia exists as a gas (bp = −33°C) at room temperature, the reaction is carried out at low temperatures using a mixture of dry ice (sublimes at −78°C) and acetone.
When dissolved in liquid ammonia, an alkali metal,...
When dissolved in liquid ammonia, an alkali metal,...
9.7K
Amino Acid Catabolism
359
Microorganisms rely on proteins as an essential carbon and energy source, particularly in environments with limited polysaccharides or lipids. However, proteins are too large to cross the plasma membrane unaided, necessitating enzymatic degradation. Microbes secrete extracellular proteases and peptidases that hydrolyze proteins into peptides, which can then be transported across the membrane. Once inside the cell, intracellular proteases degrade these peptides into free amino acids, which...
359
Aldehydes and Ketones with Amines: Imine Formation Mechanism
6.7K
Imine formation involves the addition of carbonyl compounds to a primary amine. It begins with the generation of carbinolamine through a series of steps involving an initial nucleophilic attack and then several proton transfer reactions. The second part includes the elimination of water, as a leaving group, to give the imine.
Imines are formed under mildly acidic conditions. A pH of 4.5 is ideal for the reaction.
If the pH is low or the solution is too acidic, the reaction slows down in the...
Imines are formed under mildly acidic conditions. A pH of 4.5 is ideal for the reaction.
If the pH is low or the solution is too acidic, the reaction slows down in the...
6.7K
Acid Halides to Amides: Aminolysis
3.2K
Aminolysis is a nucleophilic acyl substitution reaction, where ammonia or amines act as nucleophiles to give the substitution product. Acid halides react with ammonia, primary amines, and secondary amines to yield primary, secondary, and tertiary amides, respectively.
In the first step of the aminolysis mechanism, the amine attacks the carbonyl carbon of the acyl chloride to form a tetrahedral intermediate. In the second step, the carbonyl group is re-formed with the elimination of a chloride...
In the first step of the aminolysis mechanism, the amine attacks the carbonyl carbon of the acyl chloride to form a tetrahedral intermediate. In the second step, the carbonyl group is re-formed with the elimination of a chloride...
3.2K
Reduction of Alkenes: Asymmetric Catalytic Hydrogenation
3.5K
Catalytic hydrogenation of alkenes is a transition-metal catalyzed reduction of the double bond using molecular hydrogen to give alkanes. The mode of hydrogen addition follows syn stereochemistry.
The metal catalyst used can be either heterogeneous or homogeneous. When hydrogenation of an alkene generates a chiral center, a pair of enantiomeric products is expected to form. However, an enantiomeric excess of one of the products can be facilitated using an enantioselective reaction or an...
The metal catalyst used can be either heterogeneous or homogeneous. When hydrogenation of an alkene generates a chiral center, a pair of enantiomeric products is expected to form. However, an enantiomeric excess of one of the products can be facilitated using an enantioselective reaction or an...
3.5K


