Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Theories of Dissolution: The Danckwerts' Model and Interfacial Barrier Model01:09

Theories of Dissolution: The Danckwerts' Model and Interfacial Barrier Model

510
Various dissolution theories provide insight into the factors that influence the dissolution rate. Danckwerts' Model suggests that turbulence, rather than a stagnant layer, characterizes the dissolution medium at the solid-liquid interface. In this model, the agitated solvent contains macroscopic packets that move to the interface via eddy currents, facilitating the absorption and delivery of the drug to the bulk solution. The regular replenishment of solvent packets maintains the...
510
Solvating Effects02:12

Solvating Effects

8.0K
An understanding of the solvating effect helps rationalize the relation between solvation and acidity of the compound. In addition, this also explains the relative stability of conjugate bases for compounds with different pKa values. This lesson details, in-depth, the principle of solvating effects. The strength of an acid and the stability of its corresponding conjugate base are determined using pKa values. This observed relationship is a consequence of solvation, which is the interaction...
8.0K
Entropy and Solvation02:05

Entropy and Solvation

7.4K
The process of surrounding a solute with solvent is called solvation. It involves evenly distributing the solute within the solvent. The rule of thumb for determining a solvent for a given compound is that like dissolves like. A good solvent has molecular characteristics similar to those of the compound to be dissolved. For example, polar solutions dissolve polar solutes, and apolar solvents dissolve apolar solutes. A polar solvent is a solvent that has a high dielectric constant (ϵ...
7.4K
Intermolecular Forces03:13

Intermolecular Forces

62.8K
Atoms and molecules interact through bonds (or forces): intramolecular and intermolecular. The forces are electrostatic as they arise from interactions (attractive or repulsive) between charged species (permanent, partial, or temporary charges) and exist with varying strengths between ions, polar, nonpolar, and neutral molecules. The different types of intermolecular forces are ion–dipole, dipole–dipole, hydrogen bonds, and dispersion; among these, dipole–dipole, hydrogen...
62.8K
Solubility Equilibria: Overview01:09

Solubility Equilibria: Overview

1000
When a substance such as sodium chloride is added to water, it dissolves, forming an aqueous solution. The extent of dissolution is called solubility. The process of dissolution can exist in equilibrium, just like other chemical processes. Solubility equilibria are also called precipitation equilibria because the process of solubility can be reversible. The reverse of the solubility process is called precipitation.
Solubility is important in biological and environmental processes. A notable...
1000
Solubility Equilibria03:07

Solubility Equilibria

54.4K
Solubility equilibria are established when the dissolution and precipitation of a solute species occur at equal rates. These equilibria underlie many natural and technological processes, ranging from tooth decay to water purification. An understanding of the factors affecting compound solubility is, therefore, essential to the effective management of these processes. This section applies previously introduced equilibrium concepts and tools to systems involving dissolution and precipitation.
The...
54.4K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Sequence-Dependent Folding of Recognition-Encoded Melamine Oligomers.

Journal of the American Chemical Society·2026
Same author

Negative cooperativity in the formation of two H-bonds with an oxygen H-bond acceptor.

Chemical science·2026
Same author

Prediction of Protein-Ligand Binding Affinities Using Atomic Surface Site Interaction Points.

Journal of chemical information and modeling·2026
Same author

Template-directed ligation of recognition-encoded melamine oligomers.

Chemical science·2025
Same author

Supramolecular assembly properties of a mixed-sequence recognition-encoded melamine oligomer.

Organic & biomolecular chemistry·2025
Same author

Detecting alpha-synuclein aggregates with small molecules on single-molecule array.

Chemical science·2025

Related Experiment Video

Updated: Oct 14, 2025

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
09:42

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

Published on: January 16, 2016

9.2K

An empirical model for solvation based on surface site interaction points.

Derek P Reynolds1, Maria Chiara Storer1, Christopher A Hunter1

  • 1Yusuf Hamied Department of Chemistry, University of Cambridge Lensfield Road Cambridge CB2 1EW UK herchelsmith.orgchem@ch.cam.ac.uk.

Chemical Science
|November 8, 2021
PubMed
Summary
This summary is machine-generated.

This study introduces Surface Site Interaction Points (SSIPs) for quantifying molecular interactions. The developed model accurately predicts solvation energies and partition coefficients for diverse solutes across various solvents.

More Related Videos

Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

10.4K
Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
08:54

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid

Published on: January 25, 2020

5.8K

Related Experiment Videos

Last Updated: Oct 14, 2025

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
09:42

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

Published on: January 16, 2016

9.2K
Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

10.4K
Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
08:54

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid

Published on: January 25, 2020

5.8K

Area of Science:

  • Computational chemistry
  • Physical chemistry
  • Molecular modeling

Background:

  • Non-covalent interactions are crucial for molecular behavior.
  • Quantifying these interactions, like hydrogen bonds, is essential for predicting properties such as solvation energy and partition coefficients.
  • Existing methods may lack simplicity or broad applicability.

Purpose of the Study:

  • To develop a rule-based method for assigning Surface Site Interaction Points (SSIPs) based on chemical structure.
  • To parameterize this method using experimental data on hydrogen-bonded complexes and solvent partitioning.
  • To create a simple, spreadsheet-implementable model for calculating solvation energies and partition coefficients.

Main Methods:

  • A rule-based approach was developed to identify and assign SSIPs from molecular structures.
  • The model was parameterized using experimental data for 1:1 hydrogen-bonded complexes in non-polar solvents.
  • Solute partitioning between different solvents was also utilized for parameterization.

Main Results:

  • The developed SSIP model accurately describes solute transfer between water and various organic solvents (overall RMSD of 1.4 kJ mol⁻¹ for 1713 data points).
  • The model effectively captures the hydrophobic effect and the behavior of perfluorocarbon solvents.
  • New descriptors were determined for organic solvents not previously accessible through direct H-bond studies.

Conclusions:

  • The SSIP method provides a simple yet accurate way to quantify molecular interactions and predict solvation properties.
  • This approach offers a valuable tool for computational and physical chemists, applicable across a wide range of solutes and solvents.
  • The model's ability to describe complex phenomena like the hydrophobic effect highlights its utility in molecular modeling.