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Updated: Oct 14, 2025

MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria
Published on: February 23, 2021
Macrolides mediate transcriptional activation of the msr(E)-mph(E) operon through histone-like nucleoid-structuring
Yitao Duan1,2, Shuangqing Liu3, Yuting Gao1
1College of Environmental Science and Engineering, Nankai University, Tianjin, China.
Objectives:
The msr(E)-mph(E) operon exists widely in diverse species of bacteria and msr(E) and mph(E) genes confer high resistance to macrolides. We aimed to explore whether macrolides regulate the transcription of the operon.
Methods:
Antibiotic resistance genes in clinical isolates of Klebsiella pneumoniae were analysed by WGS. The transcription of the msr(E)-mph(E) operon was investigated by quantitative PCR. Construction of enhanced green fluorescent protein (eGFP) reporter plasmids, gene knockout and complementation experiments were used to further explore the induction mechanism of macrolides for the operon. Sequence analysis was finally used to investigate whether the operon exists widely in diverse species of bacteria.
Results:
We originally found that the treatment of a pandrug-resistant isolate of K. pneumoniae (KP1517) with macrolides obviously up-regulated the msr(E)-mph(E) operon, which was further confirmed in another nine clinical isolates of K. pneumoniae. The induction mechanism of macrolides for the operon was partly elucidated. Macrolides could activate the operon promoter, and the J10/J35 regions (J10: 5'-AGTTATCAT-3'; J35: 5'-TTGTCT-3') of the promoter were determined. Histone-like nucleoid-structuring protein (HNS) and cAMP receptor protein (CRP) were involved in the erythromycin-mediated activation of the operon promoter. The 476 strains of bacteria carrying the msr(E)-mph(E) operon currently in the NCBI database are mainly Acinetobacter baumannii (158; 33%), K. pneumoniae (95; 20%), Escherichia coli (26; 5%) and Proteus mirabilis (25; 5%). They were mainly isolated from human clinical samples (287; 60%) and had a wide geographical distribution.
Conclusions:
Macrolides could activate transcription of the msr(E)-mph(E) operon through HNS and CRP in K. pneumoniae and E. coli, and this might occur in diverse species of bacteria.
Insights
Macrolides activate the msr(E)-mph(E) operon, conferring high antibiotic resistance. This regulation involves specific promoter regions and proteins like HNS and CRP in bacteria such as Klebsiella pneumoniae.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- The msr(E)-mph(E) operon is widespread in bacteria, providing high-level macrolide resistance.
- Understanding macrolide regulation of this operon is crucial for combating antibiotic resistance.
Purpose of the Study:
- To investigate whether macrolides regulate the transcription of the msr(E)-mph(E) operon.
- To elucidate the mechanism of macrolide-induced transcription.
Main Methods:
- Whole Genome Sequencing (WGS) of Klebsiella pneumoniae isolates.
- Quantitative PCR to assess operon transcription.
- Reporter plasmid construction, gene knockout, and complementation experiments.
- Sequence analysis to determine operon prevalence.
Main Results:
- Macrolide treatment up-regulated the msr(E)-mph(E) operon in K. pneumoniae isolates.
- Identified J10/J35 regions as critical for macrolide-induced promoter activation.
- Histone-like nucleoid-structuring protein (HNS) and cAMP receptor protein (CRP) were involved in the activation.
- The operon was found in diverse bacteria, notably Acinetobacter baumannii and K. pneumoniae, primarily from human clinical samples.
Conclusions:
- Macrolides activate msr(E)-mph(E) operon transcription via HNS and CRP in K. pneumoniae and E. coli.
- This regulatory mechanism is likely conserved across diverse bacterial species.
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