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COVID-ONE-hi: The One-stop Database for COVID-19-specific Humoral Immunity and Clinical Parameters
Zhaowei Xu1, Yang Li2, Qing Lei3
1Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China; Key Laboratory of Gastrointestinal Cancer (Fujian Medical University), Ministry of Education, School of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Insights
A new database, COVID-ONE-hi, catalogs IgG/IgM immune responses and clinical data from COVID-19 patients. This resource aids in understanding variations in immune responses and clinical features related to SARS-CoV-2 infection.
Area of Science:
- Immunology
- Infectious Diseases
- Bioinformatics
Background:
- Coronavirus disease 2019 (COVID-19) exhibits variable symptoms and mortality, influenced by host immune responses.
- Humoral immunity is crucial for SARS-CoV-2 infection and recovery, yet differences in immune profiles among patients are not well understood.
Purpose of the Study:
- To establish a comprehensive database (COVID-ONE-hi) integrating COVID-19-specific humoral immune responses (IgG/IgM) with detailed clinical parameters.
- To provide a user-friendly platform with analysis tools for exploring immune responses and clinical features in COVID-19 patients.
Main Methods:
- Collected 2360 serum samples from 783 COVID-19 patients.
- Assessed IgG/IgM responses against 24 SARS-CoV-2 proteins and 199 spike protein peptides.
- Integrated 96 clinical parameters and patient demographics into the database.
Main Results:
- The COVID-ONE-hi database contains extensive data on IgG/IgM antibody profiles against SARS-CoV-2 antigens.
- Clinical parameters and patient information are linked to immune response data, enabling detailed correlation analysis.
- The database includes a dashboard and analysis pipeline for interactive data exploration and interpretation.
Conclusions:
- COVID-ONE-hi provides a valuable resource for researchers investigating the complexities of humoral immunity in COVID-19.
- Facilitates deeper understanding of the relationship between immune responses and clinical manifestations of SARS-CoV-2 infection.
- The freely accessible database and analysis tools support further research into COVID-19 pathogenesis and patient stratification.
Abstract:
Coronavirus disease 2019 (COVID-19), which is caused by SARS-CoV-2, varies with regard to symptoms and mortality rates among populations. Humoral immunity plays critical roles in SARS-CoV-2 infection and recovery from COVID-19. However, differences in immune responses and clinical features among COVID-19 patients remain largely unknown. Here, we report a database for COVID-19-specific IgG/IgM immune responses and clinical parameters (named COVID-ONE-hi). COVID-ONE-hi is based on the data that contain the IgG/IgM responses to 24 full-length/truncated proteins corresponding to 20 of 28 known SARS-CoV-2 proteins and 199 spike protein peptides against 2360 serum samples collected from 783 COVID-19 patients. In addition, 96 clinical parameters for the 2360 serum samples and basic information for the 783 patients are integrated into the database. Furthermore, COVID-ONE-hi provides a dashboard for defining samples and a one-click analysis pipeline for a single group or paired groups. A set of samples of interest is easily defined by adjusting the scale bars of a variety of parameters. After the "START" button is clicked, one can readily obtain a comprehensive analysis report for further interpretation. COVID-ONE-hi is freely available at www.COVID-ONE.cn.
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