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Updated: Oct 13, 2025

In Silico Identification and Characterization of circRNAs During Host-Pathogen Interactions
Published on: October 21, 2022
Identification of potential immune-related circRNA-miRNA-mRNA regulatory network in cutaneous squamous cell carcinoma
Yuanfeng Wei1, Xi Yang1, Limin Gao2
1Department of Medical Oncology, Cancer Center, West China Hospital, Sichuan University Chengdu 610041, Sichuan, China.
Abstract:
Circulating RNAs (circRNAs) are involved in tumor development and progression by participating in immune regulation. Nevertheless, the circRNAs expression profiles and their roles on the immunomodulatory effects in cutaneous squamous cell carcinoma (cSCC) have rarely been studied. In our study, we identified the differentially expressed circRNAs (DEcircRNAs), miRNAs (DEmiRNAs), mRNAs (DEmRNAs) in cSCC and established the circRNA competing endogenous RNAs (ceRNAs) network. Subsequently, the hub differentially expressed immune-related genes were identified and validated by immunochemistry as well as the GO and KEGG pathway analysis were performed. 54 differentially expressed circRNAs were identified and hub differentially expressed immune-related genes were identified and they were mostly associated with immune response in the progression of cSCC. Our results indicated that the potential immune-related circRNA-miRNA-mRNA network may assist in understanding the molecular mechanisms underlying the carcinogenesis and progression in cSCC. Moreover, the immune-related genes may provide an insight into the pathogenesis, molecular biomarkers, and potential therapeutic targets for cSCC patients.
Insights
This study explores circular RNAs (circRNAs) in cutaneous squamous cell carcinoma (cSCC), revealing a network of immune-related genes. These findings offer insights into cSCC development and potential therapeutic targets.
Area of Science:
- Oncology
- Immunology
- Molecular Biology
Background:
- Circular RNAs (circRNAs) influence tumor progression and immune regulation.
- The role of circRNAs in cutaneous squamous cell carcinoma (cSCC) immunomodulation is largely unstudied.
Purpose of the Study:
- To identify differentially expressed circRNAs, miRNAs, and mRNAs in cSCC.
- To establish a circRNA-mediated competing endogenous RNA (ceRNA) network.
- To identify and validate hub immune-related genes in cSCC progression.
Main Methods:
- Differential expression analysis of circRNAs, miRNAs, and mRNAs.
- Construction of a circRNA-miRNA-mRNA ceRNA network.
- Identification and validation of hub immune-related genes using immunohistochemistry.
- Gene Ontology (GO) and KEGG pathway analysis.
Main Results:
- Identified 54 differentially expressed circRNAs in cSCC.
- Established a circRNA-miRNA-mRNA ceRNA network.
- Identified hub immune-related genes predominantly linked to immune responses in cSCC progression.
Conclusions:
- The identified immune-related circRNA-miRNA-mRNA network aids in understanding cSCC carcinogenesis and progression.
- Immune-related genes may serve as potential biomarkers and therapeutic targets for cSCC.
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