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Automated Hydrophobic Interaction Chromatography Column Selection for Use in Protein Purification
Published on: September 21, 2011
Prediction of the chromatographic hydrophobicity index with immobilized artificial membrane chromatography using
Krzesimir Ciura1, Strahinja Kovačević2, Monika Pastewska3
1Department of Physical Chemistry, Medical University of Gdańsk, Aleja Gen. Hallera 107, Gdańsk 80-416, Poland; QSAR Lab Ltd., Trzy Lipy 3St. Gdańsk 80-172, Poland.
Abstract:
Screening of physicochemical properties should be considered one of the essential steps in the drug discovery pipeline. Among the available methods, biomimetic chromatography with an immobilized artificial membrane is a powerful tool for simulating interactions between a molecule and a biological membrane. This study developed a quantitative structure-retention relationships model that would predict the chromatographically determined affinity of xenobiotics to phospholipids, expressed as a chromatographic hydrophobicity index determined using immobilized artificial membrane chromatography. A heterogeneous set of 261 molecules, mostly showing pharmacological activity or toxicity, was analyzed chromatographically to realize this goal. The chromatographic analysis was performed using the fast gradient protocol proposed by Valko, where acetonitrile was applied as an organic modifier. Next, quantitative structure-retention relationships modeling was performed using multiple linear regression (MLR) methods and artificial neural networks (ANNs) coupled with genetic algorithm (GA)-inspired selection. Subsequently, the selection of the best ANN was supported by statistical parameters, the sum of ranking differences approach with the comparison of rank by random numbers and hierarchical cluster analysis.
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