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Related Concept Videos

Conjugated Proteins02:50

Conjugated Proteins

Simple proteins and protein complexes contain only amino acids. In contrast, many other proteins, called conjugated proteins, covalently bond with non-protein moieties.
Nucleoproteins are protein complexes that contain nucleic acids, categorized as deoxyribonucleoproteins (DNPs) or ribonucleoproteins (RNPs) respectively. The nucleosome is a typical example of a DNP where nuclear DNA is associated with histone proteins. The major antigen for the Covid-19 virus SARS-CoV is an RNP that is critical...
Coronavirus01:29

Coronavirus

Coronaviruses, including the severe acute respiratory syndrome coronavirus (SARS-CoV), are enveloped viruses characterized by their single-stranded, positive-sense RNA genome and helical nucleocapsid structure. The hallmark of these viruses is their club-shaped spike (S) glycoproteins that protrude from the viral envelope, facilitating attachment to host cells. Typically, coronaviruses infect the upper respiratory tract, often causing mild or asymptomatic disease. However, certain strains like...

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Related Experiment Video

Updated: Jun 16, 2026

High-throughput Confocal Imaging of Quantum Dot-Conjugated SARS-CoV-2 Spike Trimers to Track Binding and Endocytosis in HEK293T Cells
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A Bacterial Cell-Based Assay To Study SARS-CoV-2 Protein-Protein Interactions.

Benjamin L Springstein1, Padraig Deighan1, Grzegorz J Grabe1

  • 1Department of Microbiology, Harvard Medical Schoolgrid.471403.5, Boston, Massachusetts, USA.

Mbio
|November 16, 2021
PubMed
Summary
This summary is machine-generated.

A bacterial cell-based two-hybrid system was used to identify 16 protein-protein interactions within severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). This system also detected interactions between the SARS-CoV-2 spike protein receptor-binding domain and ACE2, and analyzed variant mutations.

Keywords:
SARS-CoV-2protein interactomeprotein-protein interactionstwo-hybrid analyses

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Area of Science:

  • Virology and Molecular Biology
  • Protein-protein interactions
  • Drug discovery

Background:

  • Understanding viral protein interactions is crucial for basic viral biology and developing therapeutics.
  • Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) interactions are key to addressing the COVID-19 pandemic.
  • Existing therapeutics for COVID-19 are limited, highlighting the need for novel approaches.

Purpose of the Study:

  • To develop and utilize a bacterial cell-based two-hybrid (B2H) system for analyzing the SARS-CoV-2 proteome.
  • To identify and genetically dissect intraviral protein-protein interactions (PPIs) within SARS-CoV-2.
  • To investigate the interaction between the SARS-CoV-2 spike protein receptor-binding domain (RBD) and ACE2, and the impact of mutations.

Main Methods:

  • Employed a bacterial cell-based two-hybrid (B2H) system to screen the SARS-CoV-2 proteome for protein interactions.
  • Developed a modified B2H system to detect disulfide bond-dependent PPIs in a reducing bacterial cytoplasm.
  • Analyzed the effect of specific amino acid substitutions in the RBD on its interaction with ACE2.

Main Results:

  • Identified 16 distinct intraviral PPIs involving 16 SARS-CoV-2 proteins, with many proteins interacting with multiple partners.
  • Successfully detected the interaction between the SARS-CoV-2 RBD and human ACE2 using the modified B2H system.
  • Demonstrated that specific RBD mutations found in circulating SARS-CoV-2 variants can perturb the RBD-ACE2 interaction.

Conclusions:

  • The B2H system is a versatile and genetically tractable tool for probing viral protein interactions and dissecting their functional significance.
  • The findings provide insights into SARS-CoV-2 biology and offer a platform for identifying potential therapeutic targets.
  • The modified B2H system's ability to detect disulfide bond-dependent interactions extends its utility to eukaryotic protein studies.