Fumarase affects the deoxyribonucleic acid damage response by protecting the mitochondrial desulfurase Nfs1p from

Joyce Yip1, Suqing Wang1, Jasper Tan1

  • 1Department of Microbiology and Immunology, Cancer Programme at NUSMED, Yong Loo Lin School of Medicine, National University of Singapore, 5 Science Drive 2, Block MD4, Level 5, Singapore 117545, Singapore.

Iscience
|November 22, 2021
PubMed

Insights

Fumarase protects the Nfs1p enzyme in mitochondria, crucial for DNA repair. Overexpressing Nfs1p compensates for fumarase deficiency, restoring deoxyribonucleic acid (DNA) damage response.

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Cancer Research

Background:

  • Fumarase, a Krebs cycle enzyme, functions as a tumor suppressor.
  • Fumarase plays a role in the deoxyribonucleic acid (DNA) damage response (DDR) across species.
  • Nfs1p, a cysteine desulfurase, is essential for DNA repair enzyme function.

Purpose of the Study:

  • To investigate the role of fumarase in the DNA damage response.
  • To elucidate the mechanism by which fumarase influences DNA repair.
  • To determine if Nfs1p can compensate for fumarase deficiency in DNA repair.

Main Methods:

  • Utilized yeast cells deficient in fumarase.
  • Studied the effects of Nfs1p overexpression on DNA repair.
  • Analyzed post-translational modifications of Nfs1p under DNA damage conditions.
  • Investigated the interaction between fumarase and Nfs1p in mitochondria.

Main Results:

  • Overexpression of Nfs1p restored DNA repair in fumarase-deficient yeast cells.
  • Yeast cells lacking fumarase showed increased inactivating modifications of Nfs1p during DNA damage.
  • Fumarase directly binds to Nfs1p in mitochondria, maintaining a non-oxidizing environment.
  • This interaction protects Nfs1p from modification and inactivation.

Conclusions:

  • Fumarase protects mitochondrial Nfs1p from post-translational modification, thereby supporting the DNA damage response.
  • Nfs1p is critical for generating iron-sulfur clusters, essential cofactors for DNA repair enzymes.
  • Enhanced Nfs1p activity can overcome fumarase deficiency by boosting DNA repair enzyme function.

Related Concept Videos

Spontaneous and Induced Mutations01:30

Spontaneous and Induced Mutations

Spontaneous mutations arise infrequently during DNA replication due to errors in the process. A key factor behind these errors is tautomeric shifts in nitrogenous bases, where bases transition from keto to enol forms or amino to imino forms. This shift can alter base-pairing rules, leading to mutations. Additionally, reactive oxygen species (ROS) arising from aerobic metabolism can damage DNA, resulting in depurination (loss of a purine base) or depyrimidination (loss of a pyrimidine base).
303
Nucleotide Excision Repair01:38

Nucleotide Excision Repair

DNA Distortion and Damage
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
4.0K
Biosynthesis of Nucleic Acids01:28

Biosynthesis of Nucleic Acids

Nucleic acid biosynthesis is a fundamental biochemical process that produces the purine and pyrimidine nucleotides essential for DNA and RNA synthesis. This pathway maintains a balanced nucleotide pool, preventing imbalances that could jeopardize genetic integrity and cellular function. Given the crucial role of nucleotides, their synthesis is tightly regulated to ensure proper cellular homeostasis.Purine BiosynthesisThe biosynthesis of purine nucleotides begins with ribose-5-phosphate, a...
302
Overview of DNA Repair02:25

Overview of DNA Repair

In order to be passed through generations, genomic DNA must be undamaged and error-free. However, every day, DNA in a cell undergoes several thousand to a million damaging events by natural causes and external factors. Ionizing radiation such as UV rays, free radicals produced during cellular respiration, and hydrolytic damage from metabolic reactions can alter the structure of DNA. Damages caused include single-base alteration, base dimerization, chain breaks, and cross-linkage.
Chemically...
32.1K
ATP Synthase: Mechanism01:48

ATP Synthase: Mechanism

In animals, the mitochondrial F1F0 ATP synthase is the key protein that synthesizes ATP molecules through a complex catalytic mechanism. While the nuclear genome encodes the majority of ATP synthase subunits, the mitochondrial genome encodes some of the enzyme's most critical components. The formation of this multi-subunit enzyme is a complex multi-step process regulated at the level of transcription, translation, and assembly. Defects in one or more of these steps can result in decreased...
15.5K
Base Excision Repair01:54

Base Excision Repair

One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
23.5K