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Updated: Oct 12, 2025

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Aberrant RNA splicing and therapeutic opportunities in cancers
Hirofumi Yamauchi1, Kazuki Nishimura1, Akihide Yoshimi1
1Cancer RNA Research Unit, National Cancer Center Research Institute, Tokyo, Japan.
Abstract:
There has been accumulating evidence that RNA splicing is frequently dysregulated in a variety of cancers and that hotspot mutations affecting key splicing factors, SF3B1, SRSF2 and U2AF1, are commonly enriched across cancers, strongly suggesting that aberrant RNA splicing is a new class of hallmark that contributes to the initiation and/or maintenance of cancers. In parallel, some studies have demonstrated that cancer cells with global splicing alterations are dependent on the transcriptional products derived from wild-type spliceosome for their survival, which potentially creates a therapeutic vulnerability in cancers with a mutant spliceosome. It has been c. 10 y since the frequent mutations affecting splicing factors were reported in cancers. Based on these surprising findings, there has been a growing interest in targeting altered splicing in the treatment of cancers, which has promoted a wide variety of investigations including genetic, molecular and biological studies addressing how altered splicing promotes oncogenesis and how cancers bearing alterations in splicing can be targeted therapeutically. In this mini-review we present a concise trajectory of what has been elucidated regarding the pathogenesis of cancers with aberrant splicing, as well as the development of therapeutic strategies to target global splicing alterations in cancers.
Insights
Aberrant RNA splicing, driven by mutations in splicing factors, is a hallmark of cancer. Targeting these splicing alterations offers a promising therapeutic vulnerability for cancer treatment.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- RNA splicing is frequently dysregulated in various cancers.
- Mutations in splicing factors (SF3B1, SRSF2, U2AF1) are common in cancer.
- Aberrant RNA splicing is recognized as a cancer hallmark.
Purpose of the Study:
- To review the pathogenesis of cancers with aberrant splicing.
- To discuss therapeutic strategies targeting altered splicing in cancer.
Main Methods:
- Review of genetic, molecular, and biological studies.
- Analysis of the role of splicing alterations in oncogenesis.
- Exploration of therapeutic vulnerabilities in mutant spliceosomes.
Main Results:
- Splicing factor mutations are enriched across cancers.
- Cancer cells with splicing alterations depend on wild-type spliceosomes for survival.
- This dependence presents a potential therapeutic vulnerability.
Conclusions:
- Targeting aberrant RNA splicing is a growing area in cancer therapy.
- Understanding splicing dysregulation is key to developing novel cancer treatments.
- Therapeutic strategies are being developed to exploit splicing alterations in cancer.
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