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Microfluidic Tools for Probing Fungal-Microbial Interactions at the Cellular Level
Published on: June 23, 2022
Soil bacteria protect fungi from phenazines by acting as toxin sponges
Kurt M Dahlstrom1, Dianne K Newman2
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Abstract:
Many environmentally and clinically important fungi are sensitive to toxic, bacterially produced, redox-active molecules called phenazines. Despite being vulnerable to phenazine assault, fungi inhabit microbial communities that contain phenazine producers. Because many fungi cannot withstand phenazine challenge but some bacterial species can, we hypothesized that bacterial partners may protect fungi in phenazine-replete environments. From a single soil sample, we were able to co-isolate several such physically associated pairings. We discovered the novel species Paraburkholderia edwinii and demonstrated it can protect a co-isolated Aspergillus species from phenazine-1-carboxylic acid (PCA) by sequestering it, acting as a toxin sponge; in turn, it also gains protection. When challenged with PCA, P. edwinii changes its morphology, forming aggregates within the growing fungal colony. Further, the fungal partner triggers P. edwinii to sequester PCA and maintains conditions that limit PCA toxicity by promoting an anoxic and highly reducing environment. A mutagenic screen of P. edwinii revealed this protective program depends on the stress-inducible transcriptional repressor HrcA. We show that one relevant stressor in response to PCA challenge is fungal acidification and that acid stress causes P. edwinii to behave as though the fungus were present. Finally, we reveal this phenomenon as widespread among Paraburkholderia with moderate specificity among bacterial and fungal partners, including plant and human pathogens. Our discovery suggests a common mechanism by which fungi can gain access to phenazine-replete environments and provides a tractable model system for its study. These results have implications for how microbial communities in the rhizosphere as well as in plant and human infection sites negotiate community membership via a chemical dialectic.
Insights
Bacteria can protect fungi from toxic phenazines by sequestering the compounds. This bacterial protection mechanism, involving Paraburkholderia edwinii, allows fungi to thrive in environments with high levels of phenazines.
Area of Science:
- Microbiology
- Mycology
- Biochemistry
Background:
- Fungi are sensitive to phenazines, toxic molecules produced by bacteria.
- Fungi often coexist with phenazine-producing bacteria in various environments.
- Bacterial partners may offer protection to fungi in phenazine-rich habitats.
Purpose of the Study:
- To investigate the hypothesis that bacterial partners protect fungi from phenazine toxicity.
- To discover and characterize novel bacterial species involved in fungal-bacterial mutualism.
- To elucidate the mechanisms underlying fungal protection against phenazines.
Main Methods:
- Co-isolation of fungal and bacterial species from soil samples.
- Identification of a novel bacterial species, Paraburkholderia edwinii.
- Phenazine-1-carboxylic acid (PCA) challenge assays with co-isolated partners.
- Morphological and environmental analyses of P. edwinii in response to PCA.
- Mutagenic screening of P. edwinii to identify key regulatory genes (e.g., HrcA).
- Investigation of fungal acidification as a trigger for bacterial protective responses.
Main Results:
- Discovery of Paraburkholderia edwinii, a novel bacterial species that protects a co-isolated Aspergillus fungus from phenazine-1-carboxylic acid (PCA).
- P. edwinii sequesters PCA, acting as a "toxin sponge," and alters its morphology by forming aggregates within the fungal colony.
- The fungal partner induces PCA sequestration by P. edwinii and creates an anoxic, reducing environment to mitigate PCA toxicity.
- The protective mechanism in P. edwinii is regulated by the stress-inducible transcriptional repressor HrcA.
- Fungal acidification was identified as a key stressor that triggers P. edwinii's protective response, mimicking the presence of the fungus.
- This protective phenomenon is widespread among Paraburkholderia species and shows moderate specificity among bacterial and fungal partners, including pathogens.
Conclusions:
- Bacterial sequestration of phenazines provides a crucial protective mechanism for fungi in environments where these toxins are prevalent.
- The interaction between P. edwinii and its fungal partner demonstrates a novel form of microbial mutualism driven by chemical signaling and environmental modification.
- The HrcA regulatory pathway in P. edwinii is central to its ability to sense and respond to fungal-associated stressors, leading to phenazine detoxification.
- This study reveals a common strategy employed by fungi to inhabit phenazine-replete environments, with significant implications for understanding microbial community dynamics in diverse ecosystems, including plant and human infections.
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