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Updated: Oct 12, 2025

Markerless Gene Deletion by Floxed Cassette Allelic Exchange Mutagenesis in Chlamydia trachomatis
Published on: January 30, 2020
Predicted transmembrane proteins with homology to Mef(A) are not responsible for complementing mef(A) deletion in the
Valeria Fox1, Francesco Santoro1, Gianni Pozzi1
1Department of Medical Biotechnologies, University of Siena, Siena, Italy.
Objectives:
In streptococci, the type M resistance to macrolides is due to the mef(A)-msr(D) efflux transport system of the ATP-Binding cassette (ABC) superfamily, where it is proposed that mef(A) codes for the transmembrane channel and msr(D) for the two ATP-binding domains. Phage ϕ1207.3 of Streptococcus pyogenes, carrying the mef(A)-msr(D) gene pair, is able to transfer the macrolide efflux phenotype to Streptococcus pneumoniae. Deletion of mef(A) in pneumococcal ϕ1207.3-carrying strains did not affect erythromycin efflux. In order to identify candidate genes likely involved in complementation of mef(A) deletion, the Mef(A) amino acid sequence was used as probe for database searching.
Results:
In silico analysis identified 3 putative candidates in the S. pneumoniae R6 genome, namely spr0971, spr1023 and spr1932. Isogenic deletion mutants of each candidate gene were constructed and used in erythromycin sensitivity assays to investigate their contribution to mef(A) complementation. Since no change in erythromycin sensitivity was observed compared to the parental strain, we produced double and triple mutants to assess the potential synergic activity of the selected genes. Also these mutants did not complement the mef(A) function.
Insights
The mef(A)-msr(D) gene pair in Streptococcus confers macrolide resistance. Researchers investigated candidate genes in Streptococcus pneumoniae for mef(A) complementation but found no contribution to macrolide efflux.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Macrolide resistance in streptococci is mediated by the mef(A)-msr(D) efflux system, an ATP-Binding cassette (ABC) transporter.
- The mef(A)-msr(D) gene pair, carried by phage ϕ1207.3, can transfer macrolide efflux to Streptococcus pneumoniae.
- Deletion of mef(A) did not impact erythromycin efflux in pneumococcal strains.
Purpose of the Study:
- To identify candidate genes responsible for mef(A) complementation in Streptococcus pneumoniae.
- To investigate the role of putative genes in conferring macrolide resistance.
Main Methods:
- In silico analysis using the Mef(A) amino acid sequence to identify candidate genes in the S. pneumoniae R6 genome.
- Construction of isogenic deletion mutants for candidate genes (spr0971, spr1023, spr1932).
- Erythromycin sensitivity assays and construction of double/triple mutants to assess gene function and synergistic activity.
Main Results:
- Three candidate genes (spr0971, spr1023, spr1932) were identified through in silico analysis.
- Deletion mutants of individual candidate genes did not restore erythromycin efflux, indicating they do not complement mef(A) deletion.
- Double and triple mutants also failed to complement the mef(A) function, suggesting no synergistic activity among these candidates.
Conclusions:
- The investigated candidate genes (spr0971, spr1023, spr1932) are not involved in mef(A)-mediated macrolide efflux in Streptococcus pneumoniae.
- Further research is needed to identify the actual genes responsible for mef(A) complementation or alternative mechanisms of macrolide resistance.
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