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Published on: January 9, 2020
Identification of Disease-Related Genes That Are Common between Alzheimer's and Cardiovascular Disease Using Blood
Taesic Lee1,2, Hyunju Lee1,3, The Alzheimer's Disease Neuroimaging Initiative
1Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.
Insights
This study identified shared gene signatures between Alzheimer's disease (AD) and cardiovascular disease (CVD) using blood transcriptomes. Two common upstream genes, GPBP1 and SETDB2, were found, potentially revealing shared disease mechanisms.
Area of Science:
- Genomics
- Neuroscience
- Cardiology
Background:
- Growing evidence suggests shared pathological mechanisms between Alzheimer's disease (AD) and cardiovascular disease (CVD).
- Understanding these commonalities is crucial for developing integrated therapeutic strategies.
Purpose of the Study:
- To identify shared disease-related gene signatures between AD and CVD using blood transcriptome data.
- To uncover common upstream regulatory genes that may underpin the shared pathophysiology of AD and CVD.
Main Methods:
- Genome-wide transcriptome analysis of blood samples.
- Integration of prior biological knowledge including protein-protein interactions, transcription factors, disease-gene databases, and SNPs.
- Construction of gene regulatory networks (GRNs) from AD and CVD disease-related gene (DRG) sets.
Main Results:
- Identification of distinct DRG sets for AD and CVD with high predictive accuracy in gene expression datasets.
- Construction of AD and CVD-specific GRNs.
- Discovery of two common upstream genes, GPBP1 and SETDB2, between the AD and CVD GRNs.
Conclusions:
- The study successfully identified potential AD- and CVD-related genes and common hub genes.
- GPBP1 and SETDB2 represent key common upstream regulators that may elucidate shared mechanisms between AD and CVD.
- These findings provide a foundation for further research into the interconnectedness of these debilitating diseases.
Abstract:
Accumulating evidence has suggested a shared pathophysiology between Alzheimer's disease (AD) and cardiovascular disease (CVD). Based on genome-wide transcriptomes, specifically those of blood samples, we identify the shared disease-related signatures between AD and CVD. In addition to gene expressions in blood, the following prior knowledge were utilized to identify several candidate disease-related gene (DRG) sets: protein-protein interactions, transcription factors, disease-gene relationship databases, and single nucleotide polymorphisms. We selected the respective DRG sets for AD and CVD that show a high accuracy for disease prediction in bulk and single-cell gene expression datasets. Then, gene regulatory networks (GRNs) were constructed from each of the AD and CVD DRG sets to identify the upstream regulating genes. Using the GRNs, we identified two common upstream genes (GPBP1 and SETDB2) between the AD and CVD GRNs. In summary, this study has identified the potential AD- and CVD-related genes and common hub genes between these sets, which may help to elucidate the shared mechanisms between these two diseases.
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