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Plants Metabolome Study: Emerging Tools and Techniques.

Manish Kumar Patel1, Sonika Pandey2, Manoj Kumar3

  • 1Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, Rishon LeZion 7505101, Israel.

Plants (Basel, Switzerland)
|November 27, 2021
PubMed
Summary
This summary is machine-generated.

Plant metabolomics offers insights into stress adaptation and crop improvement. This review covers analytical tools and bioinformatics for plant metabolic profiling, aiding in developing superior crops.

Keywords:
analytical toolsdata analysisgenetically modified cropsmass spectrometrymetabolomics databasesmetabolomics software toolsomicsplant biology

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Area of Science:

  • Plant Science
  • Metabolomics
  • Analytical Chemistry

Background:

  • Metabolomics provides a sensitive approach to analyze plant metabolite composition.
  • Understanding plant metabolomic regulation is key to deciphering adaptation, acclimation, and defense responses to environmental stresses.
  • Metabolomics aids in plant phenotyping and has potential in genome editing for crop improvement.

Purpose of the Study:

  • To review recent analytical tools and techniques for studying the plant metabolome.
  • To highlight the significance of sample preparation in targeted and non-targeted metabolomic methods.
  • To provide an overview of bioinformatics tools and databases for plant metabolomics.

Main Methods:

  • Discussion of advanced analytical techniques including Gas Chromatography-Mass Spectrometry (GC-MS), Liquid Chromatography-Mass Spectrometry (LC-MS), Capillary Electrophoresis-Mass Spectrometry (CE-MS), Fourier Transform Ion Cyclotron Resonance-Mass Spectrometry (FTICR-MS), Matrix-Assisted Laser Desorption/Ionization (MALDI), Ion Mobility Spectrometry (IMS), and Nuclear Magnetic Resonance (NMR).
  • Emphasis on sample preparation strategies for both targeted and non-targeted metabolomic analyses.
  • Overview of bioinformatics resources relevant to plant metabolomics.

Main Results:

  • Advanced analytical tools have significantly accelerated precise metabolic profiling in plants.
  • Comprehensive analysis of plant metabolome is achievable through a combination of sophisticated instrumentation and robust sample preparation.
  • Bioinformatics tools and databases are crucial for interpreting complex metabolomic data and advancing plant biology.

Conclusions:

  • Metabolomics is a powerful approach for understanding plant responses to environmental factors.
  • The integration of advanced analytical techniques and bioinformatics tools enhances the study of plant metabolism.
  • This review provides a foundation for utilizing metabolomics in developing next-generation crops with improved traits.