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Updated: Oct 11, 2025

Chemical Inactivation of the E3 Ubiquitin Ligase Cereblon by Pomalidomide-based Homo-PROTACs
Published on: May 15, 2019
A novel Cereblon E3 ligase modulator with antitumor activity in gastrointestinal cancer
Svenja Lier1, Andreas Sellmer2, Felix Orben1
1Medical Clinic and Policlinic II, Klinikum Rechts der Isar, TU Munich, 81675 Munich, Germany.
Abstract:
Targeted protein degradation offers new opportunities to inactivate cancer drivers and has successfully entered the clinic. Ways to induce selective protein degradation include proteolysis targeting chimera (PROTAC) technology and immunomodulatory (IMiDs) / next-generation Cereblon (CRBN) E3 ligase modulating drugs (CELMoDs). Here, we aimed to develop a MYC PROTAC based on the MYC-MAX dimerization inhibitor 10058-F4 derivative 28RH and Thalidomide, called MDEG-541. We show that a subgroup of gastrointestinal cancer cell lines and primary patient-derived organoids are MDEG-541 sensitive. Although MYC expression was regulated in a CRBN-, proteasome- and ubiquitin-dependent manner, we provide evidence that MDEG-541 induced the degradation of CRBN neosubstrates, including G1 to S phase transition 1/2 (GSPT1/2) and the Polo-like kinase 1 (PLK1). In sum, we have established a CRBN-dependent degrader of relevant cancer targets with activity in gastrointestinal cancers.
Insights
Researchers developed a novel PROTAC (proteolysis targeting chimera) called MDEG-541 to degrade MYC oncoproteins. This targeted protein degradation approach showed sensitivity in gastrointestinal cancer models, offering new therapeutic strategies.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Targeted protein degradation is a promising strategy for inactivating cancer drivers.
- Proteolysis targeting chimera (PROTAC) and Cereblon (CRBN) E3 ligase modulating drugs (CELMoDs) are key technologies in this field.
Purpose of the Study:
- To develop a MYC PROTAC (proteolysis targeting chimera), MDEG-541, utilizing a MYC-MAX dimerization inhibitor derivative and Thalidomide.
- To evaluate the efficacy of MDEG-541 in gastrointestinal cancer models.
Main Methods:
- Development of MDEG-541, a PROTAC targeting MYC.
- Testing MDEG-541 sensitivity in gastrointestinal cancer cell lines and patient-derived organoids.
- Investigating the mechanism of MYC degradation, including CRBN, proteasome, and ubiquitin dependence.
Main Results:
- MDEG-541 demonstrated sensitivity in a subset of gastrointestinal cancer cell lines and organoids.
- MYC degradation was dependent on CRBN, the proteasome, and ubiquitin.
- MDEG-541 induced degradation of CRBN neosubstrates, including GSPT1/2 and PLK1.
Conclusions:
- A novel CRBN-dependent degrader, MDEG-541, targeting MYC was successfully established.
- MDEG-541 exhibits activity in gastrointestinal cancers, highlighting its therapeutic potential.
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