The diversity of endogenous viral elements in insects
Clément Gilbert1, Carole Belliardo2
1Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, Gif-sur-Yvette, 91198, France.
Current Opinion in Insect Science
|November 28, 2021
Summary
Insect genomes contain diverse endogenous viral elements (EVEs) from multiple virus families. Studying these EVEs reveals insights into insect-virus interactions and antiviral immunity, highlighting paleovirology
Area of Science:
- Virology
- Genomics
- Insect Biology
Background:
- Endogenous viral elements (EVEs) are viral sequences integrated into host genomes.
- Insects harbor a diverse range of EVEs across various orders.
- EVEs provide a historical record of virus-host interactions.
Purpose of the Study:
- To provide an overview of the known diversity of viral sequences within insect genomes.
- To explore the implications of EVEs for understanding insect-virus interactions.
- To highlight the ongoing significance of paleovirology in insect research.
Main Methods:
- Bioinformatic analysis of publicly available insect genome sequences.
- Annotation and classification of integrated viral sequences.
- Comparative genomics to identify viral families and genome types.
Main Results:
- EVEs have been identified in at least eight insect orders.
- These EVEs represent large double-stranded DNA viruses, RNA viruses, and single-stranded DNA viruses.
- At least three families of large dsDNA viruses, 22 families of RNA viruses, and three families of ssDNA viruses are represented.
- EVE studies have led to the discovery of novel antiviral immunity mechanisms.
Conclusions:
- The diversity of insect EVEs is substantial and continues to expand with new genomic data.
- Paleovirology of insects is a dynamic field offering continuous insights into evolutionary virology.
- EVEs are crucial for understanding the co-evolution of insects and viruses.
More Related Videos
Related Concept Videos
Viral Recombination
24.0K
Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
24.0K
Retroviruses
12.8K
Retroviruses and retrotransposons both insert copies of their genetic elements into the genome of the host cell. Thus, the viral genes are passed on when the host genome is replicated or translated. A typical retroviral DNA sequence contains 3-4 genes that encode the different proteins required for its structural assembly and function as a molecular parasite. This DNA is transcribed into a single mRNA, which is very similar in structure to conventional mRNAs, i.e., it is capped at the 5’...
12.8K
Viral Mutations
34.7K
A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material...
34.7K
Size and Structure of Viral Genomes
228
Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
228
LTR Retrotransposons
18.2K
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
18.2K
Viruses of Archaea
159
Archaeal viruses play a crucial role in the ecosystems of extremophilic archaea, particularly those belonging to the phyla Euryarchaeota and Crenarchaeota. By shaping host evolution and facilitating gene transfer, these viruses influence microbial communities and contribute to genetic diversity in extreme environments. The archaea they infect thrive in acidic hot springs and hydrothermal vents characterized by high temperatures and low pH. Archaeal viruses exhibit remarkable structural...
159


