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Updated: Oct 11, 2025

Isolation And Dendritic Cell-Uptake of Small Extracellular Vesicles from Echinococcus granulosus
Published on: March 28, 2025
CD47 interactions with exportin-1 limit the targeting of m7G-modified RNAs to extracellular vesicles
Sukhbir Kaur1, Alejandra Cavazos Saldana1, Abdel G Elkahloun2
1Laboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Building 10 Room 2S235, 10 Center Dr, Bethesda, MD, 20892-1500, USA.
Abstract:
CD47 is a marker of self and a signaling receptor for thrombospondin-1 that is also a component of extracellular vesicles (EVs) released by various cell types. Previous studies identified CD47-dependent functional effects of T cell EVs on target cells, mediated by delivery of their RNA contents, and enrichment of specific subsets of coding and noncoding RNAs in CD47+ EVs. Mass spectrometry was employed here to identify potential mechanisms by which CD47 regulates the trafficking of specific RNAs to EVs. Specific interactions of CD47 and its cytoplasmic adapter ubiquilin-1 with components of the exportin-1/Ran nuclear export complex were identified and confirmed by coimmunoprecipitation. Exportin-1 is known to regulate nuclear to cytoplasmic trafficking of 5'-7-methylguanosine (m7G)-modified microRNAs and mRNAs that interact with its cargo protein EIF4E. Interaction with CD47 was inhibited following alkylation of exportin-1 at Cys528 by its covalent inhibitor leptomycin B. Leptomycin B increased levels of m7G-modified RNAs, and their association with exportin-1 in EVs released from wild type but not CD47-deficient cells. In addition to perturbing nuclear to cytoplasmic transport, transcriptomic analyses of EVs released by wild type and CD47-deficient Jurkat T cells revealed a global CD47-dependent enrichment of m7G-modified microRNAs and mRNAs in EVs released by CD47-deficient cells. Correspondingly, decreasing CD47 expression in wild type cells or treatment with thrombospondin-1 enhanced levels of specific m7G-modified RNAs released in EVs, and re-expressing CD47 in CD47-deficient T cells decreased their levels. Therefore, CD47 signaling limits the trafficking of m7G-modified RNAs to EVs through physical interactions with the exportin-1/Ran transport complex.
Insights
CD47 signaling restricts the release of specific RNA molecules into extracellular vesicles (EVs). This occurs through CD47
Area of Science:
- Molecular Biology
- Cell Biology
- Extracellular Vesicle Biology
Background:
- CD47, a self-marker and receptor, is present in extracellular vesicles (EVs).
- T cell EVs carrying CD47 influence target cells via RNA delivery.
- Specific RNAs are enriched in CD47-positive EVs.
Purpose of the Study:
- To elucidate the mechanisms by which CD47 regulates RNA trafficking into EVs.
- To investigate the interaction of CD47 with the nuclear export machinery.
Main Methods:
- Mass spectrometry to identify CD47-interacting proteins.
- Coimmunoprecipitation to confirm protein interactions.
- Leptomycin B treatment to inhibit exportin-1.
- Transcriptomic analysis of EVs from wild-type and CD47-deficient cells.
Main Results:
- CD47 interacts with ubiquilin-1 and the exportin-1/Ran nuclear export complex.
- Inhibition of exportin-1 by leptomycin B increased m7G-modified RNA levels in EVs.
- CD47 deficiency led to global enrichment of m7G-modified microRNAs and mRNAs in EVs.
- Decreased CD47 expression or thrombospondin-1 treatment enhanced EV RNA levels.
Conclusions:
- CD47 signaling limits the trafficking of m7G-modified RNAs to EVs.
- CD47 interacts with the exportin-1/Ran complex to control RNA export.
- This interaction regulates the release of specific RNAs via EVs.
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