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Updated: Oct 11, 2025

Visualizing DNA Damage Repair Proteins in Patient-Derived Ovarian Cancer Organoids via Immunofluorescence Assays
Published on: February 24, 2023
DNA damage response proteins synergistically affect the cancer prognosis and resistance
Meetal Sharma1, Prince Anand2, Yogendra S Padwad2
1Functional Genomics and Complex System Lab, Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176 061, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
Abstract:
Amplification of oxidative stress can be utilized as a strategy to attenuate cancer progression by instigating apoptosis. However, the duration of positive response to such therapies is limited, as cancer cells eventually develop resistance. The underlying molecular mechanisms of cancer cells to escape apoptosis under oxidative stress is unknown. Employing big data, and its integration with transcriptome, proteome and network analysis in six cancer types revealed system-level interactions between DNA damage response (DDR) proteins, including; DNA damage repair, cell cycle checkpoints and anti-apoptotic proteins. Cancer system biology is used to elucidate mechanisms for cancer progression, but networks defining mechanisms causing resistance is less explored. Using system biology, we identified DDR hubs between G1-S and M phases that were associated with bad prognosis. The increased expression of DDR network was involved in resistance under high oxidative stress. We validated our findings by combining H2O2 induced oxidative stress and DDR inhibitors in human lung cancer cells to conclude the necessity of targeting a 'disease-causing network'. Collectively, our work provides insights toward designing strategies for network pharmacology to combat resistance in cancer research.
Insights
Cancer cells develop resistance to oxidative stress therapies by activating DNA damage response (DDR) networks. Targeting these DDR hubs is crucial for developing effective cancer treatments and overcoming drug resistance.
Area of Science:
- Oncology
- Systems Biology
- Molecular Biology
Background:
- Oxidative stress can induce cancer cell apoptosis, but resistance limits therapeutic efficacy.
- Mechanisms of cancer cell resistance to oxidative stress-induced apoptosis are not fully understood.
Purpose of the Study:
- To elucidate the molecular mechanisms underlying cancer cell resistance to oxidative stress.
- To identify key networks and protein interactions involved in cancer progression and resistance.
Main Methods:
- Integrated analysis of big data, transcriptome, proteome, and network analysis across six cancer types.
- System biology approach to identify DNA damage response (DDR) protein networks.
- Validation using H2O2-induced oxidative stress and DDR inhibitors in human lung cancer cells.
Main Results:
- Identified system-level interactions between DDR proteins (repair, checkpoints, anti-apoptotic) linked to cancer progression.
- Discovered DDR hubs between G1-S and M phases associated with poor prognosis.
- Demonstrated that increased DDR network expression contributes to resistance under high oxidative stress.
Conclusions:
- The study highlights the critical role of DDR networks in mediating cancer cell resistance to oxidative stress.
- Targeting specific 'disease-causing networks' is essential for developing novel network pharmacology strategies.
- Findings provide insights for combating therapeutic resistance in cancer research.
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