Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Mutation, Gene Flow, and Genetic Drift01:09

Mutation, Gene Flow, and Genetic Drift

60.0K
In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
60.0K
Mutations in Microorganisms01:18

Mutations in Microorganisms

173
Mutations are heritable changes in an organism’s genome involving alterations in the base sequence of DNA or RNA. These changes can influence cellular processes and phenotypic traits, potentially transforming the unaltered wild type into a mutant form. Such changes, termed forward mutations, are pivotal in shaping the genetic diversity of organisms.RNA viruses exhibit the highest mutation rates due to the absence of robust proofreading mechanisms during genome replication. In contrast,...
173
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

7.5K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
7.5K
Speciation Rates01:07

Speciation Rates

21.8K
Overview
21.8K
Background and Environment Affect Phenotype02:27

Background and Environment Affect Phenotype

6.8K
Although the genetic makeup of an organism plays a major role in determining the phenotype, there are also several environmental factors, such as temperature, oxygen availability, presence of mutagens, that can alter an organism’s phenotype.
An example of how genetic background affects phenotype can be seen in horses. The Extension gene in horses is responsible for their coat color. A wild-type gene (EE) produces black pigment in the coat, while a mutant gene (ee) produces red pigment. A...
6.8K
Mismatch Repair01:20

Mismatch Repair

5.4K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
5.4K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Dislodging the drift barrier: Why do mutation rates vary?

Proceedings of the National Academy of Sciences of the United States of America·2026
Same author

Spontaneous Mutations Occur More in Highly Transcribed Regions in Daphnia.

Genome biology and evolution·2026
Same author

Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.

Journal of phycology·2025
Same author

Dominance reversals: the resolution of genetic conflict and maintenance of genetic variation.

Proceedings. Biological sciences·2024
Same author

'Junk' that matters: the role of transposable elements in bumblebee genome evolution.

Current opinion in insect science·2023
Same author

Estimating somatic mutation rates by bottlenecked duplex sequencing in non-model organisms: <i>Daphnia magna</i> as a case study.

Journal of biological methods·2023

Related Experiment Video

Updated: Oct 11, 2025

Measuring Microbial Mutation Rates with the Fluctuation Assay
07:44

Measuring Microbial Mutation Rates with the Fluctuation Assay

Published on: November 28, 2019

24.0K

Intraspecific Variation in the Rates of Mutations Causing Structural Variation in Daphnia magna.

Eddie K H Ho1, Sarah Schaack1

  • 1Department of Biology, Reed College, Portland, Oregon, USA.

Genome Biology and Evolution
|December 1, 2021
PubMed
Summary
This summary is machine-generated.

Structural variation-causing mutation rates (svcMRs) are high and highly variable across populations. These mutation rates are uncorrelated across different mutation types, challenging current evolutionary theories.

Keywords:
DaphniaCladoceracopy number variabledeletionduplicationinsertionmutation accumulationwaterflea

More Related Videos

Resurrection of Dormant Daphnia magna: Protocol and Applications
07:37

Resurrection of Dormant Daphnia magna: Protocol and Applications

Published on: January 19, 2018

19.0K
Following the Dynamics of Structural Variants in Experimentally Evolved Populations
04:52

Following the Dynamics of Structural Variants in Experimentally Evolved Populations

Published on: February 3, 2023

1.1K

Related Experiment Videos

Last Updated: Oct 11, 2025

Measuring Microbial Mutation Rates with the Fluctuation Assay
07:44

Measuring Microbial Mutation Rates with the Fluctuation Assay

Published on: November 28, 2019

24.0K
Resurrection of Dormant Daphnia magna: Protocol and Applications
07:37

Resurrection of Dormant Daphnia magna: Protocol and Applications

Published on: January 19, 2018

19.0K
Following the Dynamics of Structural Variants in Experimentally Evolved Populations
04:52

Following the Dynamics of Structural Variants in Experimentally Evolved Populations

Published on: February 3, 2023

1.1K

Area of Science:

  • Evolutionary biology
  • Genetics
  • Genomics

Background:

  • Structural variation-causing mutations (svcMRs) are key drivers of genetic diversity but are challenging to quantify.
  • Limited direct estimates of svcMRs hinder understanding of mutation rate evolution and variation.

Discussion:

  • This study quantifies svcMRs for six mutation categories in Daphnia magna across diverse populations.
  • High svcMRs, two orders of magnitude greater than base substitution rates, were observed.
  • Mutation rates varied significantly among populations and were uncorrelated across mutation types.

Key Insights:

  • svcMRs are unexpectedly high and exhibit substantial inter-population variability.
  • The lack of correlation across mutation categories challenges existing models of mutation rate evolution.
  • Mutations do not appear to favor genic regions disproportionately.

Outlook:

  • Further research requires more mutation rate estimates across diverse genotypes, mutation types, and species.
  • These findings necessitate revisions to prevailing theories on the evolution of mutation rates.
  • Understanding mutation rate variation is crucial for evolutionary and genomic studies.