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Updated: Oct 11, 2025

High-Throughput Total Internal Reflection Fluorescence and Direct Stochastic Optical Reconstruction Microscopy Using a Photonic Chip
Published on: November 16, 2019
Effect of photon counting shot noise on total internal reflection microscopy
Fan Cui1, David J Pine1,2
1Department of Physics, Center for Soft Matter Research, New York University, 726 Broadway, New York, NY 10003, USA. cuifan@nyu.edu.
Photon counting statistics limit the spatial resolution of Total Internal Reflection Microscopy (TIRM). This limitation blurs sharp features in colloidal particle-substrate potentials, impacting measurements.
Area of Science:
- Colloid and Surface Science
- Microscopy Techniques
- Statistical Physics
Background:
- Total Internal Reflection Microscopy (TIRM) quantifies particle-substrate distances via scattered light intensity.
- Evanescent wave illumination is key to TIRM's distance measurements.
- Potential profiles (φ(z)) are derived from separation distance distributions.
Purpose of the Study:
- To investigate the impact of photon counting statistics on TIRM's spatial resolution.
- To model and evaluate the blurring effect on potential profiles.
- To establish the role of integration time (τ) in TIRM measurements.
Main Methods:
- Development of a theoretical model for photon counting statistics.
- Brownian dynamics simulations to assess potential profile effects.
- Experimental validation of simulation results.
Main Results:
- Photon counting statistics fundamentally limit TIRM's spatial resolution.
- Sharp features in potential gradients (∂φ/∂z) are significantly blurred.
- A trade-off exists between photon counting distribution width and instantaneous position capture.
Conclusions:
- Photon counting statistics are a critical factor affecting TIRM accuracy.
- Understanding this limitation is essential for precise colloidal potential measurements.
- Optimizing integration time (τ) is crucial for balancing measurement fidelity.
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