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The Use of Reverse Phase Protein Arrays RPPA to Explore Protein Expression Variation within Individual Renal Cell Cancers
Published on: January 22, 2013
Promising Therapeutic Targets in Kidney Renal Clear Cell Carcinoma: PLXNA1 and PLXNB3
Can-Xuan Li1, Dan Long2, Quan Meng3
1Department of Urology and Shenshan Medical Center, Memorial Hospital of Sun Yat-Sen University, Shanwei, China.
Abstract:
This study sets out to identify dysregulated plexins and investigate their roles in KIRC through an integrated bioinformatics approach. RNA-sequencing data and clinicopathological information of KIRC, extracted from The Cancer Genome Atlas (TCGA) database, were used to perform comprehensive bioinformatics analysis. Almost all plexin gene family members were dysregulated in KIRC. Univariate and multivariate Cox regression analyses revealed that PLXNA1/B3 were independent prognostic factors of overall survival in patients with KIRC. Mechanically, PLXNA1/B3 may promote ccRCC progression through several cancer-related signaling pathways, tumor immunity, and angiogenesis. Drug sensitivity analysis suggested that vemurafenib was the potential drug for PLXNA1/B3. Herein, we found that PLXNA1/B3 were independent prognostic factors, making them attractive new targets for KIRC treatment.
Insights
This study identifies plexins as key players in kidney clear cell carcinoma (KIRC). PLXNA1 and PLXNB3 are highlighted as independent prognostic factors for KIRC patient survival.
Area of Science:
- Oncology
- Genetics
- Bioinformatics
Background:
- Kidney clear cell carcinoma (KIRC) is a significant health concern.
- Understanding the molecular mechanisms driving KIRC progression is crucial for developing effective treatments.
Purpose of the Study:
- To identify dysregulated plexin genes in KIRC.
- To investigate the prognostic significance of plexins in KIRC.
- To explore the potential therapeutic targets for KIRC.
Main Methods:
- Utilized The Cancer Genome Atlas (TCGA) database for RNA-sequencing data and clinicopathological information.
- Performed integrated bioinformatics analyses, including univariate and multivariate Cox regression.
- Conducted drug sensitivity analysis.
Main Results:
- Nearly all plexin gene family members were found to be dysregulated in KIRC.
- PLXNA1 and PLXNB3 were identified as independent prognostic factors for overall survival in KIRC patients.
- PLXNA1/B3 may promote KIRC progression via cancer signaling pathways, tumor immunity, and angiogenesis.
Conclusions:
- PLXNA1 and PLXNB3 are significant independent prognostic factors in KIRC.
- PLXNA1/B3 represent promising novel therapeutic targets for KIRC treatment.
- Vemurafenib emerged as a potential drug for targeting PLXNA1/B3 in KIRC.
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