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Draft Genome Sequence of Agrobacterium fabrum Strain 1D1104
Naxin Huo1, Yong Gu1, Kent F McCue1
1USDA-ARS Crop Improvement and Genetics, Western Regional Research Center, Albany, California, USA.
Microbiology Resource Announcements
|December 2, 2021
Summary
This study presents the draft genome sequence for Agrobacterium fabrum strain 1D1104. The genome includes a circular chromosome, a linear chromosome, and an AT plasmid, providing valuable genomic data for this bacterium.
Area of Science:
- Microbiology
- Genomics
- Bacteriology
Background:
- Agrobacterium fabrum is a plant-associated bacterium with significant biotechnological applications.
- Understanding the genomic architecture of bacterial strains is crucial for strain improvement and functional studies.
Purpose of the Study:
- To report the draft genome sequence of Agrobacterium fabrum strain 1D1104.
- To provide a foundational genomic resource for Agrobacterium fabrum research.
Main Methods:
- Whole-genome sequencing of Agrobacterium fabrum strain 1D1104.
- Bioinformatic assembly and analysis of sequencing reads.
- Characterization of chromosomal and plasmid components.
Main Results:
- The draft genome sequence of Agrobacterium fabrum 1D1104 was successfully assembled.
- The genome comprises a circular chromosome (2,774,783 bp) and a linear chromosome (2,110,112 bp).
- An AT plasmid (133,577 bp) and four unassembled contigs were also identified.
Conclusions:
- The genome sequence provides a comprehensive resource for studying Agrobacterium fabrum 1D1104.
- This genomic data can facilitate future research into the biology and applications of this strain.
