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Updated: Oct 10, 2025

Purification of High Molecular Weight Genomic DNA from Powdery Mildew for Long-Read Sequencing
Published on: March 31, 2017
Characterization of the mitochondrial genomes of three powdery mildew pathogens reveals remarkable variation in size
Alex Z Zaccaron1, Ioannis Stergiopoulos1
1Department of Plant Pathology, University of California Davis, Davis, CA, USA.
Abstract:
Powdery mildews comprise a large group of economically important phytopathogenic fungi. However, limited information exists on their mitochondrial genomes. Here, we assembled and compared the mitochondrial genomes of the powdery mildew pathogens Blumeria graminis f. sp. tritici, Erysiphe pisi, and Golovinomyces cichoracearum. Included in the comparative analysis was also the mitochondrial genome of Erysiphe necator that was previously analysed. The mitochondrial genomes of the four Erysiphales exhibit a similar gene content and organization but a large variation in size, with sizes ranging from 109800 bp in B. graminis f. sp. tritici to 332165 bp in G. cichoracearum, which is the largest mitochondrial genome of a fungal pathogen reported to date. Further comparative analysis revealed an unusual bimodal GC distribution in the mitochondrial genomes of B. graminis f. sp. tritici and G. cichoracearum that was not previously observed in fungi. The cytochrome b (cob) genes of E. necator, E. pisi, and G. cichoracearum were also exceptionally rich in introns, which in turn harboured rare open reading frames encoding reverse transcriptases that were likely acquired horizontally. Golovinomyces cichoracearum had also the longest cob gene (45 kb) among 703 fungal cob genes analysed. Collectively, these results provide novel insights into the organization of mitochondrial genomes of powdery mildew pathogens and represent valuable resources for population genetics and evolutionary studies.
Insights
This study compares powdery mildew fungal mitochondrial genomes, revealing significant size variation and unusual genetic features. These findings offer valuable insights into fungal pathogen evolution and population genetics.
Area of Science:
- Mycology
- Genomics
- Plant Pathology
Background:
- Powdery mildews are significant plant pathogens with poorly understood mitochondrial genomes.
- Comparative genomic analysis is crucial for understanding fungal diversity and evolution.
Purpose of the Study:
- To assemble and compare mitochondrial genomes of key powdery mildew pathogens.
- To investigate gene content, organization, size variation, and unique genetic features.
Main Methods:
- Mitochondrial genome assembly from sequencing data.
- Comparative genomics analysis of four Erysiphales species.
- Bioinformatic analysis of gene content, organization, GC distribution, and introns.
Main Results:
- Mitochondrial genomes of four powdery mildew species show similar gene content but highly variable sizes (109,800–332,165 bp).
- Unusual bimodal GC distribution observed in *Blumeria graminis* and *Golovinomyces cichoracearum*.
- Intron-rich cytochrome *b* genes in *Erysiphe necator*, *E. pisi*, and *G. cichoracearum* contain horizontally acquired reverse transcriptases.
Conclusions:
- Mitochondrial genome size variation in powdery mildews is substantial, with *G. cichoracearum* possessing the largest known fungal pathogen mitochondrial genome.
- Novel genetic elements and unusual GC content provide new perspectives on fungal mitochondrial genome evolution.
- These findings serve as a valuable resource for future population genetics and evolutionary studies of powdery mildew fungi.
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