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Updated: Oct 9, 2025

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Visualization, Quantification, and Mapping of Immune Cell Populations in the Tumor Microenvironment
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Understanding immunity in a tissue-centric context: Combining novel imaging methods and mathematics to extract new
Ronald N Germain1,2, Andrea J Radtke1,2, Nishant Thakur1,2
1Lymphocyte Biology Section, Laboratory of Immune System Biology, NIAID, NIH, Bethesda, Maryland, USA.
Immunological Reviews
|December 17, 2021
Summary
The immune system uses pre-organized cells and molecular communication for rapid defense against pathogens. Advanced imaging and computational methods reveal in vivo immune cell trafficking and signaling for better understanding of host defense.
Area of Science:
- Immunology
- Cell Biology
- Microscopy
Background:
- The immune system must respond rapidly to diverse pathogens at various body sites and times.
- Understanding immune system organization is crucial for effective host defense.
Purpose of the Study:
- To explore how immune cells are organized spatially and functionally to facilitate timely host defense.
- To investigate the molecular mechanisms underlying intercellular communication in immune responses.
- To summarize advancements in imaging tools for studying immune system organization and function.
Main Methods:
- Utilized advanced and static dynamic imaging methods over two decades.
- Employed multiplex analyses in single tissue sections and 3D tissue volumes.
- Applied new computational methods to in vivo imaging data for quantitative analysis of cell trafficking and signaling.
Main Results:
- Discovered that suborgan spatial pre-positioning of distinct immune cells promotes efficient pathogen sensing and interaction.
- Identified pre-organization as a barrier preventing pathogen spread from tissues to circulation.
- Demonstrated effective intercellular communication mechanisms among rapidly moving immune cells.
Conclusions:
- Immune system organization, including cell pre-positioning and communication, is key to timely and effective host defense.
- Advancements in multiplex imaging and computational analysis provide quantitative in vivo insights.
- Future developments in imaging technologies will further elucidate immune system operations in health and disease.

