Clonal dynamics of BRAF-driven drug resistance in EGFR-mutant lung cancer
Diana Schaufler1, David F Ast2,3,4, Hannah L Tumbrink2,3
1University of Cologne, Faculty of Medicine and University Hospital Cologne, Department I of Internal Medicine, Center for Integrated Oncology Aachen Bonn Cologne Duesseldorf, Network Genomic Medicine, Lung Cancer Group Cologne, Cologne, Germany.
Abstract:
Activation of MAPK signaling via BRAF mutations may limit the activity of EGFR inhibitors in EGFR-mutant lung cancer patients. However, the impact of BRAF mutations on the selection and fitness of emerging resistant clones during anti-EGFR therapy remains elusive. We tracked the evolution of subclonal mutations by whole-exome sequencing and performed clonal analyses of individual metastases during therapy. Complementary functional analyses of polyclonal EGFR-mutant cell pools showed a dose-dependent enrichment of BRAFV600E and a loss of EGFR inhibitor susceptibility. The clones remain stable and become vulnerable to combined EGFR, RAF, and MEK inhibition. Moreover, only osimertinib/trametinib combination treatment, but not monotherapy with either of these drugs, leads to robust tumor shrinkage in EGFR-driven xenograft models harboring BRAFV600E mutations. These data provide insights into the dynamics of clonal evolution of EGFR-mutant tumors and the therapeutic implications of BRAF co-mutations that may facilitate the development of treatment strategies to improve the prognosis of these patients.
Insights
BRAF mutations can drive resistance to EGFR inhibitors in lung cancer. Combining EGFR, RAF, and MEK inhibitors effectively shrinks tumors with BRAF V600E mutations, improving treatment strategies.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Epidermal Growth Factor Receptor (EGFR) inhibitors are standard treatments for EGFR-mutant lung cancer.
- BRAF mutations can activate MAPK signaling, potentially limiting EGFR inhibitor efficacy.
- The role of BRAF mutations in the emergence and selection of resistant clones during anti-EGFR therapy is not well understood.
Purpose of the Study:
- To investigate the impact of BRAF mutations on clonal evolution and resistance to EGFR inhibitors in EGFR-mutant lung cancer.
- To evaluate the efficacy of combined EGFR, RAF, and MEK inhibition in preclinical models.
Main Methods:
- Whole-exome sequencing to track subclonal mutations.
- Clonal analyses of individual metastases during therapy.
- Functional analyses of polyclonal cell pools.
- In vivo studies using EGFR-driven xenograft models with BRAF V600E mutations.
Main Results:
- BRAF V600E enrichment and reduced EGFR inhibitor susceptibility were observed in a dose-dependent manner.
- Resistant clones remained stable but became susceptible to combined EGFR, RAF, and MEK inhibition.
- Osimertinib/trametinib combination therapy, not monotherapy, achieved significant tumor shrinkage in xenograft models.
Conclusions:
- BRAF co-mutations influence clonal dynamics and resistance to EGFR inhibitors in lung cancer.
- Combined EGFR, RAF, and MEK inhibition is a promising therapeutic strategy for BRAF V600E-mutated EGFR-driven lung tumors.
- These findings may guide the development of improved treatment strategies for better patient prognosis.
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