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Updated: Oct 8, 2025

Genome-wide Mapping of Drug-DNA Interactions in Cells with COSMIC Crosslinking of Small Molecules to Isolate Chromatin
Published on: January 20, 2016
Small molecule targeting of chromatin writers in cancer
Andrew R Conery1, Jennifer L Rocnik1, Patrick Trojer2
1Constellation Pharmaceuticals Inc., Cambridge, MA, USA.
Abstract:
More than a decade after the launch of DNA methyltransferase and histone deacetylase inhibitors for the treatment of cancer, 2020 heralded the approval of the first histone methyltransferase inhibitor, revitalizing the concept that targeted manipulation of the chromatin regulatory landscape can have profound therapeutic impact. Three chromatin regulatory pathways-DNA methylation, histone acetylation and methylation-are frequently implicated in human cancer but hundreds of potentially druggable mechanisms complicate identification of key targets for therapeutic intervention. In addition to human genetics and functional screening, chemical biology approaches have proven critical for the discovery of key nodes in these pathways and in an ever-increasing complexity of molecularly defined human cancer contexts. This review introduces small molecule targeting approaches, showcases chemical probes and drug candidates for epigenetic writer enzymes, illustrates molecular features that may represent epigenetic dependencies and suggests translational strategies to maximize their impact in cancer therapy.
Insights
Targeting cancer
Area of Science:
- Epigenetics
- Oncology
- Chemical Biology
Background:
- DNA methyltransferase and histone deacetylase inhibitors are established cancer treatments.
- The 2020 approval of the first histone methyltransferase inhibitor highlights the therapeutic potential of targeting chromatin regulation.
- DNA methylation, histone acetylation, and methylation pathways are frequently altered in human cancers, presenting numerous therapeutic targets.
Purpose of the Study:
- To review small molecule targeting approaches for epigenetic writer enzymes in cancer therapy.
- To showcase chemical probes and drug candidates for epigenetic targets.
- To suggest translational strategies for maximizing the impact of epigenetic therapies in cancer.
Main Methods:
- Literature review of small molecule targeting approaches in cancer epigenetics.
- Analysis of chemical probes and drug candidates for epigenetic writer enzymes.
- Discussion of molecular features representing epigenetic dependencies and translational strategies.
Main Results:
- The development of targeted epigenetic therapies, including histone methyltransferase inhibitors, is revitalizing cancer treatment.
- Chemical biology approaches are crucial for identifying key targets within complex epigenetic pathways.
- Numerous potentially druggable mechanisms exist within DNA methylation, histone acetylation, and methylation pathways.
Conclusions:
- Targeted manipulation of the chromatin regulatory landscape offers profound therapeutic impact in cancer.
- Small molecule targeting of epigenetic writer enzymes shows promise for novel cancer therapies.
- Translational strategies are essential to maximize the clinical benefit of epigenetic drugs in oncology.
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