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Published on: May 19, 2023
Bioinformatics analysis of candidate genes and potential therapeutic drugs targeting adipose tissue in obesity
Yun Yu1, Yu-Han Zhang2, Liang Liu1
1Department of Cardiovascular Medicine, Second Affiliated Hospital of Nanchang University, Nanchang, China.
Abstract:
Obesity is a complex medical condition that affects multiple organs in the body. However, the underlying mechanisms of obesity, as well as its treatment, are largely unexplored. The focus of this research was to use bioinformatics to discover possible treatment targets for obesity. To begin, the GSE133099 database was used to identify 364 differentially expressed genes (DEGs). Then, DEGs were subjected to tissue-specific analyses and enrichment analyses, followed by the creation of a protein-protein interaction (PPI) network and generation of a drug-gene interaction database to screen key genes and potential future drugs targeting obesity. Findings have illustrated that the tissue-specific expression of neurologic markers varied significantly (34.7%, 52/150). Among these genes, Lep, ApoE, Fyn, and FN1 were the key genes observed in the adipocyte samples from obese patients relative to the controls. Furthermore, nine potential therapeutic drugs (dasatinib, ocriplasmin, risperidone, gemfibrozil, ritonavir, fluvastatin, pravastatin, warfarin, atorvastatin) that target the key genes were also screened and selected. To conclude the key genes discovered (Lep, ApoE, Fyn, and FN1), as well as 9 candidate drugs, could be used as therapeutic targets in treating obesity.
Insights
Bioinformatics identified key genes (Lep, ApoE, Fyn, FN1) and nine potential drugs for obesity treatment. These findings offer new therapeutic targets for this complex metabolic condition.
Area of Science:
- Genetics
- Bioinformatics
- Metabolic Disorders
Background:
- Obesity is a complex, multifactorial condition with largely unexplored mechanisms and treatment options.
- Identifying novel therapeutic targets is crucial for effective obesity management.
Purpose of the Study:
- To utilize bioinformatics approaches to discover potential therapeutic targets for obesity.
- To identify key genes and candidate drugs for future obesity treatments.
Main Methods:
- Differential gene expression analysis of the GSE133099 database to identify 364 differentially expressed genes (DEGs).
- Tissue-specific and enrichment analyses of DEGs.
- Construction of a protein-protein interaction (PPI) network and a drug-gene interaction database.
Main Results:
- Significant tissue-specific expression variations were observed in neurologic markers (34.7%).
- Key genes identified in obese adipocytes include Lep, ApoE, Fyn, and FN1.
- Nine potential therapeutic drugs (dasatinib, ocriplasmin, risperidone, gemfibrozil, ritonavir, fluvastatin, pravastatin, warfarin, atorvastatin) targeting these key genes were screened.
Conclusions:
- The identified key genes (Lep, ApoE, Fyn, FN1) represent promising targets for obesity intervention.
- The nine candidate drugs show potential for developing novel obesity therapies.
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