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Updated: Oct 8, 2025

An Intestinal Gut Organ Culture System for Analyzing Host-Microbiota Interactions
Published on: June 30, 2021
Novel strain of Pseudoruminococcus massiliensis possesses traits important in gut adaptation and host-microbe
Kaisa Hiippala1, Imran Khan1, Aki Ronkainen1
1Human Microbiome Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.
Abstract:
Fecal microbiota transplantation (FMT) is an efficient treatment for recurrent Clostridioides difficile infection and currently investigated as a treatment for other intestinal and systemic diseases. Better understanding of the species potentially transferred in FMT is needed. We isolated from a healthy fecal donor a novel strain E10-96H of Pseudoruminococcus massiliensis, a recently described strictly anaerobic species currently represented only by the type strain. The whole genome sequence of E10-96H had over 98% similarity with the type strain. E10-96H carries 20 glycoside hydrolase encoding genes, degrades starch in vitro and thus may contribute to fiber degradation, cross-feeding of other species and butyrate production in the intestinal ecosystem. The strain carries pilus-like structures, harbors pilin genes in its genome and adheres to enterocytes in vitro but does not provoke a proinflammatory response. P. massiliensis seems to have commensal behavior with the host epithelium, and its role in intestinal ecology should be studied further.
Insights
A novel strain of Pseudoruminococcus massiliensis was isolated from fecal microbiota transplantation (FMT) donors. This strain aids fiber degradation and adheres to the gut lining without causing inflammation, suggesting a commensal role.
Area of Science:
- Microbiology
- Gastroenterology
- Genomics
Background:
- Fecal microbiota transplantation (FMT) is effective for recurrent Clostridioides difficile infection.
- FMT is being explored for other intestinal and systemic diseases.
- Understanding species transferred during FMT is crucial.
Purpose of the Study:
- To isolate and characterize novel bacterial strains from FMT donors.
- To investigate the functional and adhesive properties of a new Pseudoruminococcus massiliensis strain.
Main Methods:
- Isolation of a novel bacterial strain (E10-96H) from a healthy FMT donor.
- Whole genome sequencing and comparative analysis with the type strain.
- In vitro assays to assess enzymatic activity (starch degradation) and host cell adhesion.
Main Results:
- A novel strain, E10-96H, of Pseudoruminococcus massiliensis was identified.
- The strain's genome shows high similarity to the type strain and possesses 20 glycoside hydrolase genes.
- E10-96H degrades starch in vitro, adheres to enterocytes without inducing inflammation, and exhibits pilus-like structures.
Conclusions:
- Pseudoruminococcus massiliensis E10-96H may contribute to fiber degradation and butyrate production in the gut.
- The strain demonstrates commensal behavior, adhering to the epithelium without provoking an inflammatory response.
- Further research is needed to elucidate the role of P. massiliensis in intestinal ecology.
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