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Updated: Oct 8, 2025

Author Spotlight: Advancements in Correlative Light and Electron Microscopy with Fluorescent Protein Preservation
Published on: January 12, 2024
Preservation of Fluorescence Signal and Imaging Optimization for Integrated Light and Electron Microscopy
Pieter Baatsen1,2, Sergio Gabarre1,2,3, Katlijn Vints1,2
1VIB-KU Leuven Center for Brain and Disease Research, Electron Microscopy Platform and VIB-Bioimaging Core, Leuven, Belgium.
This study presents a correlative light and electron microscopy (CLEM) protocol. It preserves fluorescent signals for ultrastructural localization in cells and tissues.
Area of Science:
- Cell biology
- Microscopy
- Biochemistry
Background:
- Accurate molecular localization within cells and tissues is crucial for life science research.
- Fluorescent microscopy offers high-resolution localization but lacks ultrastructural context.
- Correlative light and electron microscopy (CLEM) bridges this gap by combining both imaging techniques.
Purpose of the Study:
- To present an optimized protocol for correlative light and electron microscopy (CLEM).
- To enable simultaneous visualization of fluorescent signals and ultrastructure in resin-embedded samples.
- To facilitate rapid acquisition of CLEM data for biological research.
Main Methods:
- Adopted a protocol preserving genetically-encoded and antibody-derived fluorescent signals in resin-embedded samples.
- Performed high-resolution electron microscopy imaging on the same thin sections.
- Optimized scanning electron microscopy (SEM) imaging parameters for varying sample thicknesses.
Main Results:
- Successfully preserved both fluorescent signals and ultrastructural details in the same samples.
- Enabled high-resolution imaging of fluorescently labeled molecules within their ultrastructural context.
- Demonstrated suitability for dedicated CLEM instruments and adaptability for 3D EM.
Conclusions:
- The developed protocol enables efficient CLEM analysis by preserving fluorescent signals.
- This method provides crucial ultrastructural context for molecular localization studies.
- The protocol is adaptable for advanced 3D electron microscopy applications.
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