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Updated: Jul 1, 2026

Guided Protocol for Fecal Microbial Characterization by 16S rRNA-Amplicon Sequencing
Published on: March 19, 2018
Cell-Free Paper-Based Analysis of Gut Microbiota and Host Biomarkers
Melissa K Takahashi1, Xiao Tan2,3,4,5, Aaron J Dy2,5,6
1Department of Biology, California State University Northridge, Northridge, CA, USA. melissa.takahashi@csun.edu.
Abstract:
The gut microbiome and its interactions with the host have been shown to affect several aspects of human health and disease. Investigations to elucidate these mechanisms typically involve sequence analysis of fecal samples. To support these studies, we present methods to design RNA toehold switch sensors to detect microbial and host transcripts. The sensors are embedded in paper-based, cell-free reactions that enable affordable and rapid analysis of microbiome samples.
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