Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Proposal for Circadian Rhythms and Their Behavioral Outputs as Biomarkers in <i>DSM-6</i>: Response to Cuthbert et al.

The American journal of psychiatry·2026
Same author

An Unconscionable Decision.

American journal of psychotherapy·2026
Same author

Task Forces of the International Society for Bipolar Disorders: Reflections on the Past, Present, and Future.

Bipolar disorders·2026
Same author

The American Society of Clinical Psychopharmacology task force consensus statement on the deprescribing of stimulant medications in adults with ADHD<sup>✰</sup>.

European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology·2026
Same author

White matter abnormalities in bipolar II and unipolar depression - Evidence from fixel-based analysis.

Journal of affective disorders·2026
Same author

Feasibility and acceptability of Interpersonal Social Rhythm Therapy (IPSRT) for perinatal bipolar disorder.

Journal of affective disorders·2026
Same journal

Effectiveness of a posture education program in high school students: A randomized controlled trial protocol.

MethodsX·2026
Same journal

Development and characterization of silicone-based testosterone propionate implants for sustained androgen delivery in juvenile castrated male pigs.

MethodsX·2026
Same journal

Machine learning assisted multi-criteria decision-making approaches for site selection: A systematic review.

MethodsX·2026
Same journal

A systematic analytical framework for multi-source municipal solid waste characterization for energy recovery.

MethodsX·2026
Same journal

Decision tree and reinforcement learning for contextual electricity consumption forecasting in buildings.

MethodsX·2026
Same journal

Temperature-assisted stabilization of aqueous polychlorinated biphenyl stock solutions for sorption experiments.

MethodsX·2026
See all related articles

Related Experiment Video

Updated: Oct 7, 2025

Individualized rTMS Treatment for Depression using an fMRI-Based Targeting Method
07:12

Individualized rTMS Treatment for Depression using an fMRI-Based Targeting Method

Published on: August 2, 2021

3.7K

Protocol for a machine learning algorithm predicting depressive disorders using the T1w/T2w ratio.

David A A Baranger1, Yaroslav O Halchenko2, Skye Satz1

  • 1Department of Psychiatry, Western Psychiatric Institute and Clinic, University of Pittsburgh Medical Center, University of Pittsburgh, Pittsburgh, PA, USA.

Methodsx
|January 10, 2022
PubMed
Summary
This summary is machine-generated.

The T1w/T2w ratio, a novel MRI measure sensitive to cortical myelin, can classify depressive disorders. We present a data processing pipeline for this MRI analysis, aiding future research and clinical applications.

Keywords:
Cortical myelinDepressionElastic netLDAMRIMachine learningT1w/T2w ratio

More Related Videos

Author Spotlight: Therapeutic Benefit of Closed-Loop Deep Brain Stimulation in Depression Treatment
05:19

Author Spotlight: Therapeutic Benefit of Closed-Loop Deep Brain Stimulation in Depression Treatment

Published on: July 7, 2023

2.6K
A Machine Learning Approach to Design an Efficient Selective Screening of Mild Cognitive Impairment
12:18

A Machine Learning Approach to Design an Efficient Selective Screening of Mild Cognitive Impairment

Published on: January 11, 2020

7.7K

Related Experiment Videos

Last Updated: Oct 7, 2025

Individualized rTMS Treatment for Depression using an fMRI-Based Targeting Method
07:12

Individualized rTMS Treatment for Depression using an fMRI-Based Targeting Method

Published on: August 2, 2021

3.7K
Author Spotlight: Therapeutic Benefit of Closed-Loop Deep Brain Stimulation in Depression Treatment
05:19

Author Spotlight: Therapeutic Benefit of Closed-Loop Deep Brain Stimulation in Depression Treatment

Published on: July 7, 2023

2.6K
A Machine Learning Approach to Design an Efficient Selective Screening of Mild Cognitive Impairment
12:18

A Machine Learning Approach to Design an Efficient Selective Screening of Mild Cognitive Impairment

Published on: January 11, 2020

7.7K

Area of Science:

  • Neuroimaging
  • Biomedical signal processing

Background:

  • Cortical myelin changes are implicated in various neurological and psychiatric disorders.
  • The T1w/T2w ratio is a promising magnetic resonance imaging (MRI) biomarker for assessing cortical myelin content.
  • Standardized pipelines are needed for reliable T1w/T2w ratio analysis in clinical research.

Purpose of the Study:

  • To introduce a comprehensive data processing pipeline for T1w/T2w ratio analysis.
  • To validate the utility of the T1w/T2w ratio in classifying individuals with depressive disorders.
  • To provide accessible scripts for the T1w/T2w ratio and machine learning pipeline.

Main Methods:

  • Development of novel quality assurance and data analysis pipelines for T1w/T2w MRI data.
  • Application of the T1w/T2w ratio in conjunction with machine learning algorithms.
  • Classification of individuals with depressive disorders versus healthy controls using the developed pipeline.

Main Results:

  • The developed pipeline enables robust T1w/T2w ratio computation and analysis.
  • The T1w/T2w ratio, analyzed via machine learning, demonstrated potential in classifying depressive disorders.
  • The study provides reproducible scripts for T1w/T2w ratio-based classification.

Conclusions:

  • The T1w/T2w ratio is a valuable MRI measure for detecting myelin-related changes in disorders like depression.
  • The presented pipeline facilitates the application of T1w/T2w ratio analysis in clinical and research settings.
  • This work supports the use of advanced neuroimaging biomarkers for psychiatric disorder classification.