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Updated: Oct 7, 2025

Author Spotlight: Quantitative Detection of DNA Protein Crosslinks and Their Post-Translational Modifications
Published on: April 21, 2023
The ubiquitin-dependent ATPase p97 removes cytotoxic trapped PARP1 from chromatin
Dragomir B Krastev1,2, Shudong Li3, Yilun Sun4
1The CRUK Gene Function Laboratory, London, UK.
Abstract:
Poly (ADP-ribose) polymerase (PARP) inhibitors elicit antitumour activity in homologous recombination-defective cancers by trapping PARP1 in a chromatin-bound state. How cells process trapped PARP1 remains unclear. Using wild-type and a trapping-deficient PARP1 mutant combined with rapid immunoprecipitation mass spectrometry of endogenous proteins and Apex2 proximity labelling, we delineated mass spectrometry-based interactomes of trapped and non-trapped PARP1. These analyses identified an interaction between trapped PARP1 and the ubiquitin-regulated p97 ATPase/segregase. We found that following trapping, PARP1 is SUMOylated by PIAS4 and subsequently ubiquitylated by the SUMO-targeted E3 ubiquitin ligase RNF4, events that promote recruitment of p97 and removal of trapped PARP1 from chromatin. Small-molecule p97-complex inhibitors, including a metabolite of the clinically used drug disulfiram (CuET), prolonged PARP1 trapping and enhanced PARP inhibitor-induced cytotoxicity in homologous recombination-defective tumour cells and patient-derived tumour organoids. Together, these results suggest that p97 ATPase plays a key role in the processing of trapped PARP1 and the response of tumour cells to PARP inhibitors.
Insights
Poly (ADP-ribose) polymerase (PARP) inhibitors trap PARP1 in cancer cells. The p97 ATPase processes trapped PARP1, and inhibiting p97 enhances PARP inhibitor effectiveness against tumors.
Area of Science:
- Molecular biology
- Cancer research
- Biochemistry
Background:
- Poly (ADP-ribose) polymerase (PARP) inhibitors are effective against homologous recombination-defective cancers.
- PARP inhibitors function by trapping PARP1, a key enzyme, in a chromatin-bound state.
- The cellular mechanisms for processing trapped PARP1 are not fully understood.
Purpose of the Study:
- To elucidate the cellular pathways involved in processing trapped PARP1.
- To identify proteins interacting with trapped PARP1.
- To explore therapeutic strategies targeting trapped PARP1 processing.
Main Methods:
- Utilized wild-type and trapping-deficient PARP1 mutants.
- Employed rapid immunoprecipitation mass spectrometry of endogenous proteins.
- Applied Apex2 proximity labeling to map protein interactions.
Main Results:
- Identified an interaction between trapped PARP1 and the p97 ATPase/segregase.
- Demonstrated that trapped PARP1 undergoes SUMOylation and ubiquitylation, recruiting p97 for chromatin removal.
- Showed that p97 complex inhibitors, including CuET, prolong PARP1 trapping and enhance anti-cancer effects.
Conclusions:
- The p97 ATPase is crucial for processing trapped PARP1.
- Targeting the p97 complex enhances the efficacy of PARP inhibitors in cancer treatment.
- This study provides a novel therapeutic strategy for homologous recombination-defective cancers.
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