Related Experiment Video
Updated: Oct 7, 2025

A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports
Published on: October 13, 2023
NETME: on-the-fly knowledge network construction from biomedical literature
Alessandro Muscolino1, Antonio Di Maria2, Rosaria Valentina Rapicavoli1
1Department of Physics and Astronomy, University of Catania, Catania, Italy.
Background:
The rapidly increasing biological literature is a key resource to automatically extract and gain knowledge concerning biological elements and their relations. Knowledge Networks are helpful tools in the context of biological knowledge discovery and modeling.
Results:
We introduce a novel system called NETME, which, starting from a set of full-texts obtained from PubMed, through an easy-to-use web interface, interactively extracts biological elements from ontological databases and then synthesizes a network inferring relations among such elements. The results clearly show that our tool is capable of inferring comprehensive and reliable biological networks.
Supplementary Information:
The online version contains supplementary material available at 10.1007/s41109-021-00435-x.
More Related Videos
Related Concept Videos
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Protein-protein Interfaces
Primary Active Transport
Synthetic Biology
Golden rice
Golden rice is a genetically modified...
Drug Discovery: Overview
Genetic Screens
Forward genetic screens
Forward or “classical” genetic screens involve creating random mutations in an organism’s DNA using radiation, mutagens, or insertion of additional bases, which...

