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Updated: Oct 7, 2025

CRISPR-Mediated Reorganization of Chromatin Loop Structure
Published on: September 14, 2018
BCOR and BCORL1 Mutations Drive Epigenetic Reprogramming and Oncogenic Signaling by Unlinking PRC1.1 from Target
Eva J Schaefer1, Helen C Wang1, Hannah Q Karp1
1Department of Medical Oncology, Division of Hematologic Neoplasia, Dana-Farber Cancer Institute, Boston, Massachusetts.
Abstract:
Polycomb repressive epigenetic complexes are recurrently dysregulated in cancer. Unlike polycomb repressive complex 2 (PRC2), the role of PRC1 in oncogenesis and therapy resistance is not well-defined. Here, we demonstrate that highly recurrent mutations of the PRC1 subunits BCOR and BCORL1 in leukemia disrupt assembly of a noncanonical PRC1.1 complex, thereby selectively unlinking the RING-PCGF enzymatic core from the chromatin-targeting auxiliary subcomplex. As a result, BCOR-mutated PRC1.1 is localized to chromatin but lacks repressive activity, leading to epigenetic reprogramming and transcriptional activation at target loci. We define a set of functional targets that drive aberrant oncogenic signaling programs in PRC1.1-mutated cells and primary patient samples. Activation of these PRC1.1 targets in BCOR-mutated cells confers acquired resistance to treatment while sensitizing to targeted kinase inhibition. Our study thus reveals a novel epigenetic mechanism that explains PRC1.1 tumor-suppressive activity and identifies a therapeutic strategy in PRC1.1-mutated cancer.
Significance:
We demonstrate that BCOR and BCORL1 mutations in leukemia unlink PRC1.1 repressive function from target genes, resulting in epigenetic reprogramming and activation of aberrant cell signaling programs that mediate treatment resistance. Our study provides mechanistic insights into the pathogenesis of PRC1.1-mutated leukemia that inform novel therapeutic approaches. This article is highlighted in the In This Issue feature, p. 85.
Insights
Mutations in BCOR and BCORL1 disrupt Polycomb Repressive Complex 1.1 (PRC1.1) function in leukemia, causing epigenetic changes, activating oncogenic signals, and leading to treatment resistance.
Area of Science:
- Epigenetics
- Cancer Biology
- Molecular Oncology
Background:
- Polycomb repressive complexes (PRCs) are crucial epigenetic regulators frequently altered in cancer.
- The specific role of Polycomb Repressive Complex 1 (PRC1) in oncogenesis and therapy resistance remains less understood compared to PRC2.
- Recurrent mutations in BCOR and BCORL1 subunits are observed in certain leukemias.
Purpose of the Study:
- To investigate the functional consequences of BCOR and BCORL1 mutations in leukemia.
- To elucidate the role of the noncanonical PRC1.1 complex in cancer development and treatment resistance.
- To identify potential therapeutic strategies for PRC1.1-mutated cancers.
Main Methods:
- Analysis of PRC1.1 complex assembly and function in leukemia models.
- Chromatin immunoprecipitation and sequencing to assess PRC1.1 localization and target genes.
- Transcriptomic analysis to identify dysregulated signaling pathways.
- Assessment of treatment resistance and sensitivity in cellular and patient-derived samples.
Main Results:
- BCOR/BCORL1 mutations disrupt PRC1.1 assembly, unlinking its enzymatic core from chromatin-targeting components.
- Mutated PRC1.1 localizes to chromatin but loses repressive activity, causing epigenetic reprogramming.
- Aberrant activation of specific target genes drives oncogenic signaling and confers treatment resistance.
- PRC1.1 target gene activation sensitizes cells to targeted kinase inhibition.
Conclusions:
- BCOR/BCORL1 mutations impair PRC1.1 tumor-suppressive activity through a novel epigenetic mechanism.
- Dysfunctional PRC1.1 leads to epigenetic reprogramming and activation of oncogenic pathways in leukemia.
- Targeting PRC1.1-driven pathways represents a promising therapeutic strategy for affected cancers.
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