Opposite Effects of Flexible Single-Stranded DNA Regions and Rigid Loops in DNAzyme on Colloidal Nanoparticle...

Strains in biomolecules greatly restrict their structural flexibility. The effects of DNA's structural flexibility on nanoparticle stability have remained less explored in the field of plasmonic biosensors. In the present study, we discover the opposite effects of a rigid loop and a flexible single-stranded DNA (ssDNA) region in DNAzyme on the colloidal stability of gold nanoparticles (AuNPs), which afford "turn-on" plasmonic detection of Pb²⁺. In specific, DNAzyme-functionalized AuNPs undergo spontaneous assembly at high ionic strength upon hybridization to their substrate sequence because of a DNA base stacking interaction. In the presence of Pb²⁺, however, the DNAzyme grafted on the AuNP cleaves the substrate and forms an ssDNA region in the middle of the rigid loop. The induced structural flexibility of the surface-grafted DNAzyme by the ssDNA region in the middle helps elevate interparticle entropic repulsion, thereby bringing AuNP assemblies back to dispersion. We discover that this process can afford a dramatic increase of the AuNPs' plasmon resonance for determination of Pb²⁺ concentration. Under optimized conditions, a detection limit of 8.0 nM can be achieved for Pb²⁺ by this method with high selectivity. Its applicability to Pb²⁺ analysis in tap water samples has also been demonstrated.